PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G019700.1
Common NameB456_002G019700, LOC105786628
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 257aa    MW: 28955.2 Da    PI: 5.4714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G019700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.74e-18111322128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         p GfrF Pt ee++++yLk+ +++++++    +  +   + ePw++    ++ ++   f++ ++ k+++++r +r++ +g W ++   kev
  Gorai.002G019700.1  11 PIGFRFLPTKEEILCDYLKPIIKADPIPS-G-VMMFYGANREPWNIF---DQ-DSAESFWVITKLKKRSKSRIERTAGDGCWLQQYV-KEV 94 
                         89************************999.5.445556678*****5...33.344456666666677899***********98877.555 PP

                 NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmh.eyrl 128
                         ++k +ge++g  k +++ + +++k ++ +Wvmh ey+l
  Gorai.002G019700.1  95 KHKdGGEVIGFDKYFTLITSKKSKKSNGQWVMHdEYSL 132
                         55549999************************956776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-204153IPR003441NAC domain
PROSITE profilePS5100521.39710153IPR003441NAC domain
PfamPF023651.1E-1111131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSTVRSQLQI PIGFRFLPTK EEILCDYLKP IIKADPIPSG VMMFYGANRE PWNIFDQDSA  60
ESFWVITKLK KRSKSRIERT AGDGCWLQQY VKEVKHKDGG EVIGFDKYFT LITSKKSKKS  120
NGQWVMHDEY SLKDQEAASA GLSDSVICEI KNKDAAVVSS DYEESEGEIK KNKKRKLMEV  180
PSDSTNDVAI VPEENQTFDY MAAEVGGFSP SPPFSACLNQ QPNPWTWQVL KAILECLIII  240
LTICYLPNPC TIFTCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176KKNKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963953e-73JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468600.10.0PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A0D2PZE40.0A0A0D2PZE4_GOSRA; Uncharacterized protein
STRINGGorai.002G019700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-15NAC domain containing protein 83
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]