PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G054200.1

Common Name

B456_002G054200, LOC105777314

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 183aa MW: 20604.3 Da PI: 8.7621

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G054200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	178.2	4.9e-55	4	159	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +++s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG C++l svnla + q +a ++ ++ + ++e ++ +++ ++ Gorai.002G054200.1 4 SHNSAPEQLCYIPCNLCNIILAVNVPCNSLFETVTVRCGQCSNLCSVNLAASFQSRAGKDV--------QVPNYTSSEYRIDLGSSSRCKN 86 68899********************************************9999999885........3334444444443333333222 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++++++++ ++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl Gorai.002G054200.1 87 KLPKRATTINTTTQER-----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 159 2223333333333333.....469**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-62	8	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-6	98	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSSSHNSAPE QLCYIPCNLC NIILAVNVPC NSLFETVTVR CGQCSNLCSV NLAASFQSRA 60 GKDVQVPNYT SSEYRIDLGS SSRCKNKLPK RATTINTTTQ ERVVNRPPDK RHRAPSLYNQ 120 FIKEEIQRIK LNNPDITHRE AFSTAAKNWA RFPHIHFGLM LETDNQPKLN DDSTEPFHQL 180 LK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ526781	6e-37	HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455973.1	1e-135	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012455982.1	1e-135	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_012455990.1	1e-135	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016732275.1	1e-135	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016732276.1	1e-135	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0D2Q5K0	1e-133	A0A0D2Q5K0_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8MZQ2	1e-133	A0A1U8MZQ2_GOSHI; axial regulator YABBY 5-like
STRING	Gorai.002G054200.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-80	YABBY family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G054200.1
Entrez Gene	105777314

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]