PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G061900.1

Common Name

B456_002G061900, LOC105786703

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 121aa MW: 13876.9 Da PI: 8.4248

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G061900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.1	1.4e-12	4	98	1	92
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEE.EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWe.vkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k lt dv+k+ + +p +f+ +h +++ +++t + d sg+ We + + +rk+++ v++k W+++v+ +gL+ gD ++F+++++ Gorai.002G061900.1 4 FEKCLTEVDVNKQ--VAIPSDFV-QHlpDYEGGRTITFPVHDVSGNLWEnFGYYIRKGDDYpkPVFQKDWRKYVRVKGLRPGDKIIFRVERNg 93 8999988888876..8*****.555955556789999*****8466644666655889**********************99886 PP SEE.. CS B3 88 sefel 92 +++ + Gorai.002G061900.1 94 DNGAP 98 66655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	4.64E-16	2	102	No hit	No description
SuperFamily	SSF101936	1.41E-12	2	95	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.4E-13	2	94	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.1E-9	4	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MPSFEKCLTE VDVNKQVAIP SDFVQHLPDY EGGRTITFPV HDVSGNLWEN FGYYIRKGDD 60 YPKPVFQKDW RKYVRVKGLR PGDKIIFRVE RNGDNGAPIY TIAAQKKIEL LGFPIWGPEF 120 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468654.1	6e-85	PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBL	A0A0D2M7D2	1e-83	A0A0D2M7D2_GOSRA; Uncharacterized protein
STRING	Gorai.002G061900.1	2e-84	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22252	4	5

Link Out ? help Back to Top
Phytozome	Gorai.002G061900.1
Entrez Gene	105786703

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]