PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G065900.2

Common Name

B456_002G065900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 165aa MW: 18716.5 Da PI: 10.5789

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G065900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.7	7e-07	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft++++ +e++ ++ n+ p +e e LA+k ++ +qV +WFqNrR+ Gorai.002G065900.2 13 RFTQTEVAGMETVLQEhhNQMPAREILESLAEKFsesterkgrtIVQFKQVWNWFQNRRYAI 74 699999999999999777999******************9999999*********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.45E-11	4	76	IPR009057	Homeodomain-like
SMART	SM00389	6.3E-4	7	81	IPR001356	Homeobox domain
PROSITE profile	PS50071	9.718	13	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-8	13	80	IPR009057	Homeodomain-like
CDD	cd00086	1.63E-4	13	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGRPPSNGGP AFRFTQTEVA GMETVLQEHH NQMPAREILE SLAEKFSEST ERKGRTIVQF 60 KQVWNWFQNR RYAIRAKSSK VPGKLNVTSM PRDDSNPVRN VLQPVAAPMP PPMAAPMSTA 120 MPATTGRMDF DSVFEVLKAS FLFPKFGINN WMLHSPFSYL SEIWK

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457877.1	6e-95	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
Swissprot	Q8RWJ7	1e-47	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A0D2NIV8	1e-119	A0A0D2NIV8_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.002G065900.1	1e-103	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.3	1e-47	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.002G065900.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]