PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G077500.1

Common Name

B456_002G077500, LOC105787188

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NZZ/SPL

Protein Properties

Length: 326aa MW: 34991.4 Da PI: 8.463

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G077500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	53.8	5.7e-17	31	323	39	314
NOZZLE 39 tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkkl.vvatvgdtssvaaisntatrlpvpvdrgvvlqgfps........... 117 k +grk k q kk rgmgva+ler + e + ++ g + a+ + pv +gv g p Gorai.002G077500.1 31 VKSNKGRKSSGKGPYQ--KKQPQRGMGVAQLERLRKMSETRTTtTINQFGCEA------MGASNV--PVLHGVANYGVPPmminggsgglw 111 4556899998887765..44457*********9888877662344444333......333444..477888888888778888878888 PP NOZZLE 118 .......slgssrilc.ggvg..sgqvmi.dpvispwgfvetsa..tthelssisnpqmynassnnrcdtcfkkkrldgdqnnvvrsnggg 195 l +r++ gg g qv++ +p g +s +++elss+++ q + ++ cd cfkkkr + ++ + ngg Gorai.002G077500.1 112 gwgadtdGLMMQRVVGnGGFGgfNSQVLVgNPGNVQVGCAAASVveASKELSSMPKFQH--CKPEH-CDLCFKKKRCNMEN---GKFNGGL 196 887777744446655324444222455553454444444433321124599987654..44555.********9988...789 PP NOZZLE 196 fskytmi.pppmngydeyllqsdhhqrsqgfl...ydqriaraasvsaasasinpyfneatnltgsreefgsvlegnprngsrgvkeyeff 282 f ++ p + + l+++ q ++ + + r ar+a aa+ +n +ne+ + + + gn v eyeff Gorai.002G077500.1 197 FNQFGQAlPNKGTDFHGWNLENN--QNTNEEMmkgFSARAARSAYAYAAAGQMN--INETVDVVAIHRK------GNSFGTGSYVMEYEFF 277 8763666566666666666..33333221225789999997777777776..6887777665544......44445556799* PP NOZZLE 283 pgkydervs.k.......vakvaslvg......dcspntidlslkl 314 pgk + ++ k + a +vg + +pn +dlslkl Gorai.002G077500.1 278 PGKNGRNTAsKewefpeeASSSAITVGgeasyaNNAPNCVDLSLKL 323 98754331211111112222223332211114568999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	4.4E-19	29	323	IPR014855	Plant transcription factor NOZZLE

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MATSLTLLTP NTDNPTTKPM EDEAKPAMEF VKSNKGRKSS GKGPYQKKQP QRGMGVAQLE 60 RLRKMSETRT TTTINQFGCE AMGASNVPVL HGVANYGVPP MMINGGSGGL WGWGADTDGL 120 MMQRVVGNGG FGGFNSQVLV GNPGNVQVGC AAASVVEASK ELSSMPKFQH CKPEHCDLCF 180 KKKRCNMENG KFNGGLFNQF GQALPNKGTD FHGWNLENNQ NTNEEMMKGF SARAARSAYA 240 YAAAGQMNIN ETVDVVAIHR KGNSFGTGSY VMEYEFFPGK NGRNTASKEW EFPEEASSSA 300 ITVGGEASYA NNAPNCVDLS LKLSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469078.1	0.0	PREDICTED: uncharacterized protein LOC105787188 isoform X1
TrEMBL	A0A0D2R288	0.0	A0A0D2R288_GOSRA; Uncharacterized protein
STRING	Gorai.002G077500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18639	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	2e-08	sporocyteless (SPL)

Link Out ? help Back to Top
Phytozome	Gorai.002G077500.1
Entrez Gene	105787188

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]