PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G080600.1
Common NameB456_002G080600, LOC105780024
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 585aa    MW: 64917.3 Da    PI: 6.4633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G080600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.71.9e-1302115801373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+++s++++ + ++l+a+ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    ++ l+++++++e++P+l
  Gorai.002G080600.1 211 LKQLLIACAKVLSENNMDEFDKLIAKARGAVSISGEPVQRLGAYMVEGLVARKEASGSSIYRALHCREPE---GKDLLSYMQVLYEICPYL 298
                         689******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+h++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++++rL+ + e++++p+ef+ 
  Gorai.002G080600.1 299 KFGHMAANGAIAEACRTEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPISKyaRGGGLEAVKRRLEALSEKFNIPVEFQG 389
                         **********************************************************999989999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +     d++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl rf+e+leyy a+f+s+
  Gorai.002G080600.1 390 -MPVFAPDITRDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVTTLVEQESNTNTAPFLPRFIETLEYYLAMFESI 479
                         .6888999*********************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+ +er++vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgW
  Gorai.002G080600.1 480 DETLPRDRKERVNVEEHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRGLLRCYS-KHYKLVEKDGAMLLGW 569
                         **********************************************************************9999.55************** PP

                GRAS 363 kdrpLvsvSaW 373
                         kdr+L+s+SaW
  Gorai.002G080600.1 570 KDRNLISASAW 580
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.578185562IPR005202Transcription factor GRAS
PfamPF035146.5E-128211580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDSHQLFGYG VTGAGLSYST FPSIPNRLFS SLKSDIGNSP NSPFFTPFDC DTNTTLSDSQ  60
EQHSSTENLS GLSPSCNSSL ESNTCFHRLS PSLGCRSESL LFSSGGTSYT QDANSGHKVI  120
YTLQELETAL MAPDENEDLT TPSVSHGESS RPQTAGQRSR AWSQERQGSL ALLPQTSFVS  180
KHRQSTEVSH VEKRQKSIED FSWLGIPPGN LKQLLIACAK VLSENNMDEF DKLIAKARGA  240
VSISGEPVQR LGAYMVEGLV ARKEASGSSI YRALHCREPE GKDLLSYMQV LYEICPYLKF  300
GHMAANGAIA EACRTEDRIH IIDFQIAQGT QWMTLLQALA ARPGGAPHVR ITGIDDPISK  360
YARGGGLEAV KRRLEALSEK FNIPVEFQGM PVFAPDITRD MLDVRPGEAL AVNFPLQLHH  420
TPDESVDVNN PRDGLLRMVK SLSPKVTTLV EQESNTNTAP FLPRFIETLE YYLAMFESID  480
ETLPRDRKER VNVEEHCLAR DIVNIIACEG KERVERHELF GKWKSRLTMA GFRQYPLSSY  540
VNSVIRGLLR CYSKHYKLVE KDGAMLLGWK DRNLISASAW HCDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6221858026378Protein SCARECROW
5b3h_A2e-6221858025377Protein SCARECROW
5b3h_D2e-6221858025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459551.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0D2NJU00.0A0A0D2NJU0_GOSRA; Uncharacterized protein
STRINGGorai.002G080600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]