PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G096200.1
Common NameB456_002G096200, LOC105781448
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 569aa    MW: 61446 Da    PI: 6.8796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G096200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30223280260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gorai.002G096200.1 223 EDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 280
                         7****************************************.***************85 PP
2WRKY106.31.6e-33386444159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gorai.002G096200.1 386 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 444
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.94E-24221281IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-25222281IPR003657WRKY domain
SMARTSM007741.5E-32222280IPR003657WRKY domain
PROSITE profilePS5081122.01223281IPR003657WRKY domain
PfamPF031061.9E-23223279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37371446IPR003657WRKY domain
SuperFamilySSF1182902.22E-29378446IPR003657WRKY domain
PROSITE profilePS5081138.825381446IPR003657WRKY domain
SMARTSM007743.1E-39386445IPR003657WRKY domain
PfamPF031063.4E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MEEQKLASSS SSSSSSSSAV AAATMQHDLS GSAGSGGARY KLVAPAKLPI SRSACITIPP  60
GLSPSSFLES PVLLSDVKAE PSPTTGSLIK PQAVHASVAC STYSATTACS NAFDERNPST  120
FEFRPHPRSN MAPADLDPQR SEQSQQIQIQ YQAVSFNSSA TVKSEMAGSS NVLSLSVPVH  180
TATSMASAHA EVDAEELNQI GNPNGGMPSG QSDHRGVGPV SSEDGYNWRK YGQKHVKGCE  240
FPRSYYKCTH PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPSRRYSSG NIMSGQEERS  300
DKVSSLNGRD DKSYCVYGQM AHSIEPNSTA DISPVTANDD NLDEIEDDDP FSKRRKMDGG  360
IDITPVVKPI REPRVVVQTV SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR  420
KHVERASHDP KAVITTYEGK HNHDVPTAKT GSHDTAGAVA MCGPSRIRSE ENDAISLDLG  480
VGISSVPEHA SNEHQQLHSE LVQSRPQTGG SSFKFVQPTM MAYYGALNGS MNQYVSRENP  540
SEGRGVEITP LNHSYAFPQS MGRILTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37223446877Probable WRKY transcription factor 4
2lex_A5e-37223446877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697610.0KF669761.1 Gossypium hirsutum WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461447.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2Q3760.0A0A0D2Q376_GOSRA; Uncharacterized protein
STRINGGorai.002G096200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]