PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G096200.2
Common NameB456_002G096200, LOC105781448
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 439aa    MW: 48163.2 Da    PI: 6.6945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G096200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.7e-3193150260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gorai.002G096200.2  93 EDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 150
                         7****************************************.***************85 PP
2WRKY106.81.1e-33256314159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gorai.002G096200.2 256 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 314
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.8E-2491151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2592151IPR003657WRKY domain
SMARTSM007741.5E-3292150IPR003657WRKY domain
PROSITE profilePS5081122.0193151IPR003657WRKY domain
PfamPF031061.3E-2393149IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-38241316IPR003657WRKY domain
SuperFamilySSF1182901.57E-29248316IPR003657WRKY domain
PROSITE profilePS5081138.825251316IPR003657WRKY domain
SMARTSM007743.1E-39256315IPR003657WRKY domain
PfamPF031062.4E-26257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAPADLDPQR SEQSQQIQIQ YQAVSFNSSA TVKSEMAGSS NVLSLSVPVH TATSMASAHA  60
EVDAEELNQI GNPNGGMPSG QSDHRGVGPV SSEDGYNWRK YGQKHVKGCE FPRSYYKCTH  120
PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPSRRYSSG NIMSGQEERS DKVSSLNGRD  180
DKSYCVYGQM AHSIEPNSTA DISPVTANDD NLDEIEDDDP FSKRRKMDGG IDITPVVKPI  240
REPRVVVQTV SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP  300
KAVITTYEGK HNHDVPTAKT GSHDTAGAVA MCGPSRIRSE ENDAISLDLG VGISSVPEHA  360
SNEHQQLHSE LVQSRPQTGG SSFKFVQPTM MAYYGALNGS MNQYVSRENP SEGRGVEITP  420
LNHSYAFPQS MGRILTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3793316877Probable WRKY transcription factor 4
2lex_A2e-3793316877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697610.0KF669761.1 Gossypium hirsutum WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461447.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-158WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2Q3760.0A0A0D2Q376_GOSRA; Uncharacterized protein
STRINGGorai.002G096200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-151WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]