PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G096300.2
Common NameB456_002G096300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 475aa    MW: 52658.3 Da    PI: 5.6484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G096300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.11.9e-1351034731374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+elL +cA+a++s+d+ +++ l+a+l++++s +g+pmqRl ay++e+L arla+s+s++ykal+++e +   s e l+++++++e++P++
  Gorai.002G096300.2 103 LKELLCTCAKAIESNDMYMTDCLIAQLRQMVSVSGEPMQRLGAYLLEGLVARLASSGSSIYKALRCKEPA---SPELLSYMHILYEICPYF 190
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea+++e+rvHiiDf+i qG QW++L++aLa R++gpps+RiTg+++p+s   +   le +g+rL+k+Ae+++vpfef++
  Gorai.002G096300.2 191 KFGYMSANGAIAEAMKEESRVHIIDFQIAQGSQWLTLINALAGRSRGPPSIRITGIDDPTSAfaRGGGLEIVGQRLRKLAESCKVPFEFHA 281
                         ************************************************************999999************************* PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a + ++++le+L ++pgEa+aVn++++lh+++desv+++++rd++L+l kslsPkvv++ve+ea++n+++F  rfle++ y+s++f+s+
  Gorai.002G096300.2 282 -AAISGTEVQLENLGIQPGEAIAVNFAMMLHHMPDESVDTQNHRDRLLRLAKSLSPKVVTLVEHEANTNTAPFIPRFLETMGYFSSIFESI 371
                         .8999************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre++eri+vE+++l+reivn++aceg+er+er e ++kWr+r+ +aGF+p pls ++++++k+ll+ + +  y++ee++g l+lgW
  Gorai.002G096300.2 372 DVSLPREHKERINVEQHCLAREIVNIIACEGQERVERYELFGKWRSRFIMAGFTPSPLSPFVNATIKTLLQSYCD-KYTLEERDGVLYLGW 461
                         **************************************************************************5.5************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         +dr++++ +aWr
  Gorai.002G096300.2 462 MDRAIIASCAWR 473
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.18177454IPR005202Transcription factor GRAS
PfamPF035146.4E-133103473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MQNSSSTASF SPDGSPVSQQ NYTYPLDLHS PENTCASPIS GSCVIDNEND LGLMIRQLET  60
AMLGIDSGDL DLHAIAASGR ATKVSVEAER WKYMKEMIAR GDLKELLCTC AKAIESNDMY  120
MTDCLIAQLR QMVSVSGEPM QRLGAYLLEG LVARLASSGS SIYKALRCKE PASPELLSYM  180
HILYEICPYF KFGYMSANGA IAEAMKEESR VHIIDFQIAQ GSQWLTLINA LAGRSRGPPS  240
IRITGIDDPT SAFARGGGLE IVGQRLRKLA ESCKVPFEFH AAAISGTEVQ LENLGIQPGE  300
AIAVNFAMML HHMPDESVDT QNHRDRLLRL AKSLSPKVVT LVEHEANTNT APFIPRFLET  360
MGYFSSIFES IDVSLPREHK ERINVEQHCL AREIVNIIAC EGQERVERYE LFGKWRSRFI  420
MAGFTPSPLS PFVNATIKTL LQSYCDKYTL EERDGVLYLG WMDRAIIASC AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-651074738375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461453.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0D2QAB80.0A0A0D2QAB8_GOSRA; Uncharacterized protein
STRINGGorai.002G096300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]