PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G110100.1

Common Name

B456_002G110100, LOC105782949

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 529aa MW: 58874.6 Da PI: 4.6699

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G110100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.6	2.8e-111	150	520	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn.sseelaalklfsevs 88 lv+lLl+cAeav +d +la+++L+++ a+p gd++qR+ +f+ +L++rl+ +v++ + ++ + ++ +e++ a++l+++++ Gorai.002G110100.1 150 LVHLLLACAEAVGCRDIHLATSMLSQIGASATPLGDSLQRVSYCFATGLKSRLSLlqNVNGNGTITNCAIDVPMIaREEKMEAFQLLYQTT 240 68************************************************987213333333334444444436899999***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 P++ f++++aN+aI +a++g+ +HiiD+++++ lQWp+L++aLasRpegpp+lRiT++ s e + ele+ + L + A++l + +ef+ Gorai.002G110100.1 241 PYIAFGFMAANEAICQAAQGKGSLHIIDLGMKHTLQWPSLIRALASRPEGPPTLRITALTSDE--DLVELEASMKSLVEDASSLSIAMEFH 329 *********************************************************55..99********************** PP GRAS 180 vlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 ++ + + + ++ e+L++++gE+l +n+v++lh+ ++es + + ++L+++k+l P ++++veq+a+hn++ Fl rfle+l+yysa+fd Gorai.002G110100.1 330 MISEPvTPSLMTRENLNLREGESLYINSVMHLHKYVKESRGSLK---AILQAIKKLGPALLTMVEQDANHNGPFFLGRFLESLHYYSAIFD 417 7444588899**********************88776666...9*************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 slea+lpr+s +r+k+Er +++ei+n+va eg++r erhe++ +Wr++l++aGF+ + l+ +qa+++l+ ++ dgy++ +e+g+l+l Gorai.002G110100.1 418 SLEASLPRHSPQRMKIERLHFAEEIRNIVAYEGTDRMERHERADQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYTLGSEKGCLLL 506 *****************************************************9985..89********************** PP GRAS 361 gWkdrpLvsvSaWr 374 gWk+rpL+ +SaW+ Gorai.002G110100.1 507 GWKGRPLMLASAWQ 520 ***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.678	124	502	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-109	150	520	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MEGFNGWLYE SFNHDFAIRR FCSARVELEQ GELGDAMNNE IEPFCPDDEI STPHLAASEV 60 DDFVDSFINM DYDVDDDGDG DDKDDRNSKK QQNFHHFQDK IEAFSIVNDD SLMIEGDELE 120 MSSSCEDLGA NEMVPSIEEA SHGVDQGLHL VHLLLACAEA VGCRDIHLAT SMLSQIGASA 180 TPLGDSLQRV SYCFATGLKS RLSLLQNVNG NGTITNCAID VPMIAREEKM EAFQLLYQTT 240 PYIAFGFMAA NEAICQAAQG KGSLHIIDLG MKHTLQWPSL IRALASRPEG PPTLRITALT 300 SDEDLVELEA SMKSLVEDAS SLSIAMEFHM ISEPVTPSLM TRENLNLREG ESLYINSVMH 360 LHKYVKESRG SLKAILQAIK KLGPALLTMV EQDANHNGPF FLGRFLESLH YYSAIFDSLE 420 ASLPRHSPQR MKIERLHFAE EIRNIVAYEG TDRMERHERA DQWRRQLGRA GFQVMGLKCL 480 SQARMMLSVY GCDGYTLGSE KGCLLLGWKG RPLMLASAWQ LHNASSAY*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MEGFNGWLYE SFNHDFAIRR FCSARVELEQ GELGDAMNNE IEPFCPDDEI STPHLAASEV  60
DDFVDSFINM DYDVDDDGDG DDKDDRNSKK QQNFHHFQDK IEAFSIVNDD SLMIEGDELE  120
MSSSCEDLGA NEMVPSIEEA SHGVDQGLHL VHLLLACAEA VGCRDIHLAT SMLSQIGASA  180
TPLGDSLQRV SYCFATGLKS RLSLLQNVNG NGTITNCAID VPMIAREEKM EAFQLLYQTT  240
PYIAFGFMAA NEAICQAAQG KGSLHIIDLG MKHTLQWPSL IRALASRPEG PPTLRITALT  300
SDEDLVELEA SMKSLVEDAS SLSIAMEFHM ISEPVTPSLM TRENLNLREG ESLYINSVMH  360
LHKYVKESRG SLKAILQAIK KLGPALLTMV EQDANHNGPF FLGRFLESLH YYSAIFDSLE  420
ASLPRHSPQR MKIERLHFAE EIRNIVAYEG TDRMERHERA DQWRRQLGRA GFQVMGLKCL  480
SQARMMLSVY GCDGYTLGSE KGCLLLGWKG RPLMLASAWQ LHNASSAY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-62	157	519	26	378	Protein SCARECROW
5b3h_A	3e-62	157	519	25	377	Protein SCARECROW
5b3h_D	3e-62	157	519	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463528.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A0D2QB36	0.0	A0A0D2QB36_GOSRA; Uncharacterized protein
STRING	Gorai.002G110100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17612	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-81	RGA-like 1

Link Out ? help Back to Top
Phytozome	Gorai.002G110100.1
Entrez Gene	105782949

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]