PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G122200.2
Common NameB456_002G122200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 146aa    MW: 15638.7 Da    PI: 10.2558
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G122200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.82e-07110132325
                         XXCHHHCHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKk 25 
                         ++ r +rk+kNR +A rsR+RK+
  Gorai.002G122200.2 110 DDPRHKRKIKNRKSAARSRARKQ 132
                         6889******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.3E-4101135No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEEVWGDIGL ASLNDHPAVT PTANPPSFPS VILQDFLAIP INKEMPPTAR SGCGTSLTEE  60
TTLFGSLPPT PATLFTLNAR SIASVAVKAP APSFPSSCRK KGQENEENSD DPRHKRKIKN  120
RKSAARSRAR KQVNESVSLS NRTSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465462.19e-93PREDICTED: protein FD-like
RefseqXP_012465469.19e-93PREDICTED: protein FD-like
RefseqXP_012465476.19e-93PREDICTED: protein FD-like
TrEMBLA0A0D2R4R31e-101A0A0D2R4R3_GOSRA; Uncharacterized protein
STRINGGorai.002G122200.14e-92(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.26e-09basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]