PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G124900.1
Common NameB456_002G124900, LOC105784643
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 337aa    MW: 37163.1 Da    PI: 10.0077
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G124900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind390.23e-11913361301
           GAGA_bind   1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85 
                         mdd g+re  r k+ +y+ a     +++   +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a+ erdn++++l+
  Gorai.002G124900.1   1 MDDGGHREngRLKAdQYRTAqgqWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNNAIAERDNAIANLQ 91 
                         99***999999999999955443345556667*********************************************************** PP

           GAGA_bind  86 lvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkk 169
                         ++ensla    s++p+g ++++g+k++++ qq +++ p++++ +++ re++ +++lp++  ++ea ++++ k+ ++ak+  ++k+  k+ k
  Gorai.002G124900.1  92 YRENSLAsgniSSCPPGFHISRGVKHMQHPQQhVHHlPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNKKAtKPPK 182
                         *****9999999********************55559********************9988888877777776666665443333224444 PP

           GAGA_bind 170 ksekskkkvkkesader.........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                         k ++++++++k     +                         +k+++k  dl+ln+v +D+st+ +PvCsCtG+lrqCYkWGnGGWqS+CC
  Gorai.002G124900.1 183 KVKQENEDSDKLM---SgkshewkggqdvggagddlnkqlvtTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCC 270
                         4444444333333...13346799******************************************************************* PP

           GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         tt++S+yPLP+++++r+aRi+grKmS++af+klL +LaaeGydlsnpvDLk+hWAkHGtn+++ti+
  Gorai.002G124900.1 271 TTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 336
                         *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.8E-1701336IPR010409GAGA-binding transcriptional activator
PfamPF062177.7E-1021336IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDGGHRENG RLKADQYRTA QGQWLMHQPS MKQIMAIMAE RDAAIQERNL ALSEKKAAIA  60
ERDMAFLQRD AAIAERNNAI AERDNAIANL QYRENSLASG NISSCPPGFH ISRGVKHMQH  120
PQQHVHHLPH ISEVPYNSRE MHASDVLPVT PGTSEAAKSR QGKRAKEAKV IASNKKATKP  180
PKKVKQENED SDKLMSGKSH EWKGGQDVGG AGDDLNKQLV TTKSDWKGKD LGLNQVVFDD  240
STMAPPVCSC TGVLRQCYKW GNGGWQSSCC TTSLSMYPLP AVPNKRHARI GGRKMSGSAF  300
NKLLTRLAAE GYDLSNPVDL KHHWAKHGTN RYITIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182KKATKPPKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465992.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012465997.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466004.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466013.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466019.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466025.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466035.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466042.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466050.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016707528.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707529.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707530.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707531.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-149BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A0D2Q5470.0A0A0D2Q547_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KYL50.0A0A1U8KYL5_GOSHI; protein BASIC PENTACYSTEINE6-like
STRINGGorai.002G124900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-136basic pentacysteine 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]