PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G124900.5

Common Name

B456_002G124900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BBR-BPC

Protein Properties

Length: 327aa MW: 35895.5 Da PI: 9.9352

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G124900.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	387.8	1.7e-118	1	326	1	301
GAGA_bind 1 mdddgsre..rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd g+re r k+ +y+ + q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a+ erdn++++l+++e Gorai.002G124900.5 1 MDDGGHREngRLKAdQYRT-------AQGQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNNAIAERDNAIANLQYRE 84 8999996545555434433.......3579*********************************************************** PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkse 172 nsla s++p+g ++++g+k++++ qq +++ p++++ +++ re++ +++lp++ ++ea ++++ k+ ++ak+ ++k+ k+ kk + Gorai.002G124900.5 85 NSLAsgniSSCPPGFHISRGVKHMQHPQQhVHHlPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNKKAtKPPKKVK 175 9999999******************55559****************9988888877777776666665443333224444444 PP GAGA_bind 173 kskkkvkkesader.........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238 +++++++k + +k+++k dl+ln+v +D+st+ +PvCsCtG+lrqCYkWGnGGWqS+CCtt+ Gorai.002G124900.5 176 QENEDSDKLM---SgkshewkggqdvggagddlnkqlvtTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTS 263 4444333333...13346799****************************************************************** PP GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +S+yPLP+++++r+aRi+grKmS++af+klL +LaaeGydlsnpvDLk+hWAkHGtn+++ti+ Gorai.002G124900.5 264 LSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 326 ************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.3E-100	1	326	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.2E-161	1	326	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDDGGHRENG RLKADQYRTA QGQIMAIMAE RDAAIQERNL ALSEKKAAIA ERDMAFLQRD 60 AAIAERNNAI AERDNAIANL QYRENSLASG NISSCPPGFH ISRGVKHMQH PQQHVHHLPH 120 ISEVPYNSRE MHASDVLPVT PGTSEAAKSR QGKRAKEAKV IASNKKATKP PKKVKQENED 180 SDKLMSGKSH EWKGGQDVGG AGDDLNKQLV TTKSDWKGKD LGLNQVVFDD STMAPPVCSC 240 TGVLRQCYKW GNGGWQSSCC TTSLSMYPLP AVPNKRHARI GGRKMSGSAF NKLLTRLAAE 300 GYDLSNPVDL KHHWAKHGTN RYITIK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	172	KKATKPPKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00540	DAP	Transfer from AT5G42520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465992.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012465997.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466004.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466013.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466019.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466025.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466035.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466042.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_012466050.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6
Refseq	XP_016707528.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016707529.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016707530.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_016707531.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-141	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A0D2MA32	0.0	A0A0D2MA32_GOSRA; Uncharacterized protein
STRING	Gorai.002G124900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-128	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Gorai.002G124900.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]