PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G127500.1

Common Name

B456_002G127500, LOC105785011

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 282aa MW: 31324.3 Da PI: 8.1082

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G127500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.1	4.4e-33	75	131	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAas+Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e Gorai.002G127500.1 75 VVRYRECLKNHAASIGGNVYDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 131 689***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-24	75	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-30	76	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-31	77	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.909	78	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.48E-16	213	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-29	215	275	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-27	216	273	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEVRGEEHDI KTPVRDGNHN GDAVLTCTQT LDQVHRPQRQ QSLGHVGRSP NPDRIAGASV 60 APISVSSNTK PLAGVVRYRE CLKNHAASIG GNVYDGCGEF MPSGEEGTLE ALKCAACDCH 120 RNFHRKEVDG ETQQFGGRRS LMLNPLQLPP PLPSPTMLHH HHHHHQKYTS PPSAMVTPMN 180 VAFGGGGTES SSEDLNMYQS NPEGMAAAAP PYVLSKKRFR TKFTQEQKDK MLELAEKLGW 240 RINKQDEDEV EKFCAEYGVK RQVFKVWMHN NKNVKKPPQD Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	215	273	16	74	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21779177}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00238	DAP	Transfer from AT1G75240	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269\|PubMed:21779177}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393831	1e-106	GQ393831.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0796 SSR marker CGR5914 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466396.1	0.0	PREDICTED: zinc-finger homeodomain protein 5-like
Swissprot	Q9FRL5	7e-71	ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBL	A0A0D2Q596	0.0	A0A0D2Q596_GOSRA; Uncharacterized protein
STRING	Gorai.002G127500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7279	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	2e-65	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Gorai.002G127500.1
Entrez Gene	105785011

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]