PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G131600.3
Common NameB456_002G131600, LOC105785170
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 141aa    MW: 15840.2 Da    PI: 9.4573
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G131600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-1744133198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lp +f++++  +k ++  +tl de+g ++   +    k+ +  l++GWk+F+ a++L +gD +vF+l +r++f 
  Gorai.002G131600.3  44 FIKSMLQSHVTGGFWLGLPVHFCKTNL-PK-RDEVMTLVDEEGHEYPTIY--LAKKTG--LSGGWKGFAVAHRLVDGDAIVFQLLQRTTF- 127
                         89*********************9884.33.5568***************..555444..9**********************9998888. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++r
  Gorai.002G131600.3 128 -KVYIIR 133
                         .888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-2437135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-2138135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-2642133No hitNo description
PROSITE profilePS5086312.26644135IPR003340B3 DNA binding domain
PfamPF023622.2E-1644133IPR003340B3 DNA binding domain
SMARTSM010195.4E-2244135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MIPRRVSKHR DLSNRVYASD EARAEALEKA EKLESGLDPH FPVFIKSMLQ SHVTGGFWLG  60
LPVHFCKTNL PKRDEVMTLV DEEGHEYPTI YLAKKTGLSG GWKGFAVAHR LVDGDAIVFQ  120
LLQRTTFKVY IIRVKGSEQS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466565.11e-102PREDICTED: B3 domain-containing protein At5g42700
SwissprotQ1G3M31e-58Y3918_ARATH; B3 domain-containing protein At3g19184
SwissprotQ69V363e-59Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0D2QCC61e-100A0A0D2QCC6_GOSRA; Uncharacterized protein
STRINGGorai.002G131600.11e-101(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]