PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G134600.1
Common NameB456_002G134600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 129aa    MW: 14505.2 Da    PI: 7.8889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G134600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-112501055
                 AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtae......eAakaaiaarkkleg 55
                        +k+g+WvAeIr+p   +kr r++lg++ t+        Aa+a++ a  +l+g
  Gorai.002G134600.1  2 RKWGKWVAEIREP---NKRSRIWLGSYSTPIvrdlnsAAARAYDTAVFYLRG 50
                        46**********9...336**********999******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.158158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-22159IPR001471AP2/ERF domain
CDDcd000186.77E-22160No hitNo description
SMARTSM003801.7E-23164IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-14259IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTPIV RDLNSAAARA YDTAVFYLRG PSARLNFPDL  60
ILQEDDELKD ISPASIRKKA TEVGAKVDAL HTTSLHHHHA SNSSESSNPP QVFSKPDLNK  120
YPETFDED*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466612.15e-68PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X1
RefseqXP_012466613.15e-68PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X2
SwissprotQ8LC309e-45RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A0D2NMP51e-89A0A0D2NMP5_GOSRA; Uncharacterized protein
STRINGGorai.002G134600.12e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.16e-43related to AP2 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]