PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G134800.1

Common Name

B456_002G134800, LOC105785206

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 218aa MW: 24983.1 Da PI: 8.9972

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G134800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.9	1.3e-21	83	142	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Gorai.002G134800.1 83 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEQLgkygKIEGKNVFYWFQNHKARERQ 142 7***************99************************************97 PP
2	Wus_type_Homeobox	118	4.2e-38	83	144	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Gorai.002G134800.1 83 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEQLGKYGKIEGKNVFYWFQNHKARERQKQ 144 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-13	74	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.398	78	143	IPR001356	Homeobox domain
SMART	SM00389	6.7E-8	80	147	IPR001356	Homeobox domain
CDD	cd00086	2.49E-5	83	144	No hit	No description
Pfam	PF00046	2.8E-19	83	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-8	84	142	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGNMKMHQLA CGFWEQEPLL SLGCKRLRPL APKLHSNSTY TTVSSFDLKS FIRPDSGPRK 60 LGNGPSEDNN RHSPPVETHP GGTRWNPTQE QIGILEMLYR GGMRTPNAQQ IEQITEQLGK 120 YGKIEGKNVF YWFQNHKARE RQKQKRSSLG LTHCPRSSAP ITPITLDTRV ETMEREEDSP 180 CKRKCRSWSF EEEDSRSSSK EDENRTLELF PLHPESR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466614.1	1e-162	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	1e-71	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A0D2M9H2	1e-161	A0A0D2M9H2_GOSRA; Uncharacterized protein
STRING	Gorai.002G134800.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	6e-67	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Gorai.002G134800.1
Entrez Gene	105785206

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]