PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G135200.1

Common Name

B456_002G135200, LOC105785209

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 333aa MW: 37344.3 Da PI: 8.5792

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G135200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.7	6e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ e+ weF+++ Fkkg k+ Gorai.002G135200.1 25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANEFFKKGGKH 106 9**************************************************************999.........********** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i+r+k++ Gorai.002G135200.1 107 LLCEIHRRKTA 117 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-37	17	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-60	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.72E-34	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.7E-32	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-20	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-20	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-20	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MALMVDTCEG VLLSLEPHKA VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP ERWEFANEFF KKGGKHLLCE IHRRKTAQPS 120 INHHYHPHIP HSALNAPSFF PFPSQVSISP TDMDDSPPLS SPRGAIGGYG SSVTALSEDN 180 ERLRRSNSLL MSELTHMRKL YSDIIYFVQN HVKPVTPGNS YSPSLLLSGP PPAVNTSTSL 240 LQKPLNQLLG YYPKSPNPQF QGLNSPTATS QSSLTIVEEP SSNSCKTRLF GVPLQSKKRL 300 HPEYSTAANM ETSKARLVLE KDDLSCIYRH LH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-22	10	116	11	131	Heat shock factor protein 1
5d5v_B	7e-22	10	116	11	131	Heat shock factor protein 1
5d5v_D	7e-22	10	116	11	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ683910	0.0	KJ683910.1 Gossypium hirsutum heat shock transcription factor (HSF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466619.1	0.0	PREDICTED: heat stress transcription factor B-4-like isoform X2
Swissprot	Q9C635	1e-113	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A0D2MAN0	0.0	A0A0D2MAN0_GOSRA; Uncharacterized protein
STRING	Gorai.002G135200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2900	28	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-114	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	Gorai.002G135200.1
Entrez Gene	105785209

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]