PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G167900.1
Common NameB456_002G167900, LOC105785584
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 743aa    MW: 81900.2 Da    PI: 5.6153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G167900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07141163427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         ++C ff++ G C  GdrC F Hgp
  Gorai.002G167900.1 141 VPCIFFLK-GLCIKGDRCAFLHGP 163
                         69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033867IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183966IPR000571Zinc finger, CCCH-type
PfamPF156631.1E-113993No hitNo description
PROSITE profilePS5010310.6156995IPR000571Zinc finger, CCCH-type
SMARTSM003560.0557194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418137164IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5137163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5138162IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4142163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MVAATPQQQQ QQQKQAAVAT TTVTVAGATK PSAEEEALKR NTDCVYFLAS PLTCKKGSEC  60
EYRHSEYARV NPRDCYFWLN GNCLNPKCGF RHPPLDGLLG TQATTPTGSS KPSSHTAVTT  120
APASHMPYNQ GASYSSSKQA VPCIFFLKGL CIKGDRCAFL HGPTTSNKAT QPAATTTARE  180
PHSLKKTFGA VEASQSQKFP PTNVSNTVGL APESKPSAKV KAAFTRSGTG TEKSVPSPVG  240
LDEELPRHKA TKTTSIVNGG SMGHSGWLHQ PHASDEQTFH GSKDTEEFLR ESSPGFDVLV  300
DDELRDSDFY HGEDQYGGTR GHEGRNVNEY DIGRPANYDA MVDVDQEMFH DARGYDSFDN  360
VQGNYDWDQQ RASSERIPLG SSTLERRGYS RVDSSDHVEE SDLRHRLSKR RRVNGLKSVV  420
SHDNALENYE GERNYRAGSH RDSHRLPPNE RSLGSRLQGR IKLPGRSVNG SDLHSEREIE  480
RGRNWGRHSP GKPQTSSQGR LRDRIKGKVE GDFNNNEGRN FGGLRIRREI TDERNADFAG  540
PKSLAELKVG KNSDNKQHQS LGKRRSVGDH QQIEGDLSFK GPMPLSEILK RKRQSEGATS  600
GDGVASVNKE DVDQKQSKGS LISGSNNKEV SVTVKEANKD EESKVAATDI GITEATHGES  660
SQPLNMSEHE ADADAEDGII GDERIEDHEV EADDQRDGEY YYEQVDEGEY NYEEDENVDP  720
EEEYIEEEDG DDFAKKLGVM FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408412KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.25280.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467148.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D2MC290.0A0A0D2MC29_GOSRA; Uncharacterized protein
STRINGGorai.002G167900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]