PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G169300.1

Common Name

B456_002G169300, LOC105785595

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 318aa MW: 35409.5 Da PI: 7.1078

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G169300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Gorai.002G169300.1 19 PRLRWTPELHQCFVQAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-32	15	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.272	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-25	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHQC FVQAIERLGG QDKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRSDLSRQ DRSSTHQRRQ SFEKHDGCVD DVIDIMGFHS TSKPIEESDS 120 HLIHSPLPSK RARIETKSSI SDQNLQCSQG VCERVSNPYF YDDYLQTMAV YKGIKEGNGA 180 FIWEHTQTHP QAQGQSTTFS LPHDLYNLNS FKYSVEESDF LKVSKVDVED HKNVGKHVDD 240 HPNARRHAGK DDEVEDKGGG CELSLSLSLH HPSSQSEISS SSEALSLVSG SNYKDCSGSS 300 CTLRSINLDL SIALCGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467160.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A0D2MC48	0.0	A0A0D2MC48_GOSRA; Uncharacterized protein
STRING	Gorai.002G169300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G169300.1
Entrez Gene	105785595

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]