PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G177000.1
Common NameB456_002G177000, LOC105785690
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 618aa    MW: 67860.5 Da    PI: 5.34
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G177000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.11.1e-1392486071374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        + p++  +++ s++l++   f+e++P+l
  Gorai.002G177000.1 248 LVHALMACAEAVQQNNLNLAEALVKQIGFLAISQAGAMRKVATYFAEALARRIYR--------FYPQNPLDHSFSDVLHM--HFYETCPYL 328
                         689****************************************************........44555555557777777..4******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa R +gpp +R+Tg+g+p++++++ l+e+g++La+fAe+++v+fe++ +v
  Gorai.002G177000.1 329 KFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRVGGPPAFRLTGIGPPSHDNSDHLQEVGWKLAQFAEKIHVEFEYRGFV 419
                         ******************************************************************************************* PP

                GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         a++l+dl+ ++L+++p   Ea+aVn+v++lh+ll++++++++    v ++vk+++P++v++veqea+hn++ Fl+rf+e+l+yys+lfdsl
  Gorai.002G177000.1 420 ANSLADLDASMLDLRPseVEAVAVNSVFELHKLLARPAAIDK----VFSVVKQMKPELVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSL 506
                         ****************8889**************88888888....********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         e ++   s++++++++++lg++i+nvvaceg +r+erhe+l +Wr+rl++aGF+pv+l+++a kqa++ll+ ++ +dgy vee++g+l+lg
  Gorai.002G177000.1 507 EGSV---SSQDKVMSEVYLGKQICNVVACEGVDRIERHESLTQWRNRLSTAGFSPVHLGSNAFKQASMLLALFAgGDGYGVEENNGCLMLG 594
                         ***7...9999******************************************************************************** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W++rpL+++SaW+
  Gorai.002G177000.1 595 WHNRPLITTSAWK 607
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.5E-3841114No hitNo description
PfamPF120411.6E-3641108IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098567.759222586IPR005202Transcription factor GRAS
PfamPF035143.8E-137248607IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MKRDHNHLQP NPDPSSLLDA PSTGKAKVWD EEAAQQDCGM DELLAVLGYK VKTSDMAEVA  60
QKLEQLEEVM CNVQDDGISH LASETVHYNP SDLSTWLESM LSELNPPSTF DPFGAAGTAA  120
AALDDSFLGP AESSTLTTLD FDNINRKHQK SGQQIFEEAS CSDYDLKAIP GKAIYSQNTQ  180
PQPQTHDSSS SSTPTNVKSE KRFKSTSGPP SPSDIFPPPP PAAASYGIPT DSTRPVVLVD  240
SQENGIRLVH ALMACAEAVQ QNNLNLAEAL VKQIGFLAIS QAGAMRKVAT YFAEALARRI  300
YRFYPQNPLD HSFSDVLHMH FYETCPYLKF AHFTANQAIL EAFEGKKRVH VIDFSMNQGM  360
QWPALMQALA LRVGGPPAFR LTGIGPPSHD NSDHLQEVGW KLAQFAEKIH VEFEYRGFVA  420
NSLADLDASM LDLRPSEVEA VAVNSVFELH KLLARPAAID KVFSVVKQMK PELVTIVEQE  480
ANHNGPVFLD RFTESLHYYS TLFDSLEGSV SSQDKVMSEV YLGKQICNVV ACEGVDRIER  540
HESLTQWRNR LSTAGFSPVH LGSNAFKQAS MLLALFAGGD GYGVEENNGC LMLGWHNRPL  600
ITTSAWKLTK KTTAISQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6724360614378Protein SCARECROW
5b3h_A1e-6724360613377Protein SCARECROW
5b3h_D1e-6724360613377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.33200.0seedling
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6439690.0DQ643969.1 Gossypium barbadense DELLA protein GAI (GAI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467264.10.0PREDICTED: DELLA protein GAIP-B
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A0D2R8380.0A0A0D2R838_GOSRA; Uncharacterized protein
STRINGGorai.002G177000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]