PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G178800.1
Common NameB456_002G178800, LOC105785710
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28427.5 Da    PI: 8.9532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G178800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1893147256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq + Lee F+ n++++ +++  LA +l+L  rqV vWFqNrRa+ k
  Gorai.002G178800.1  93 RKKLRLTKEQSRLLEESFRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSK 147
                         78889************************************************98 PP
2HD-ZIP_I/II1171.1e-3793181190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq++lLEesF+ +++L+p++K +la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  Gorai.002G178800.1  93 RKKLRLTKEQSRLLEESFRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 181
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-1778147IPR009057Homeodomain-like
SuperFamilySSF466891.8E-1878150IPR009057Homeodomain-like
PROSITE profilePS5007116.61789149IPR001356Homeobox domain
SMARTSM003895.2E-1691153IPR001356Homeobox domain
CDDcd000863.75E-1592150No hitNo description
PfamPF000461.6E-1593147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
SMARTSM003404.0E-22149192IPR003106Leucine zipper, homeobox-associated
PfamPF021838.7E-10149183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNFTFYLLKI NRYLSLLCSS ATFMAVLPTG SSHLELTISV PGFASSPSFP SSGDQGGCTV  60
RDLDINQVPA EDEWITASME DEEESCNNGA PPRKKLRLTK EQSRLLEESF RLNHTLNPKQ  120
KGALALQLKL RPRQVEVWFQ NRRARSKLKQ TEMECEYLKR WFGSLTEQNR RLQREVEELR  180
AMKVAPPTVI SPHSCEPLPA STLTMCPRCE RVTTTTTAAI EKGSAKMTAA TNPTATTLSS  240
KVGTSALQSR PSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3936731e-75GQ393673.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0638 SSR marker CGR5696 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467291.10.0PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX18e-84HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-84HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A0D2MCI00.0A0A0D2MCI0_GOSRA; Uncharacterized protein
STRINGGorai.002G178800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.16e-69homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]