PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G187500.1
Common NameB456_002G187500, LOC105785811
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 425aa    MW: 46526 Da    PI: 8.4696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G187500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-1766115255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Gorai.002G187500.1  66 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 115
                         59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-1166115IPR001471AP2/ERF domain
SMARTSM003807.5E-3366131IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2166123IPR016177DNA-binding domain
CDDcd000181.67E-2966122No hitNo description
Gene3DG3DSA:3.30.730.102.7E-2966122IPR001471AP2/ERF domain
PROSITE profilePS5103222.04966123IPR001471AP2/ERF domain
PRINTSPR003672.6E-96778IPR001471AP2/ERF domain
PRINTSPR003672.6E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEEAFRRLKG VVNVPDLDPR DATTYGKKSA VSTTTSATST TTTSTTPTTT NKRSLKENGG  60
TGGTMRYRGV RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGIKART  120
NFVYPVSEPH SASDHLLPQF NFSRQSQPSI RDLNRKHHHF GHSSKWPPFA NSQVGDFSLG  180
PGGHQRNASL NMLLLRDLLN SSSYLSFQAP PPFLVDQFQL INGTSSAASS LPSSFSIPTI  240
LPGGTSLNSP TSCSLRASGN FADSFIDSTM TLPRKEKNSS HKTSVPALSN IQADDMEFFR  300
SEPSDSGLLQ EIIQGFLPKP SLKKSDTDCI QHSIVPPVTE MSSSQSLSGL KESKKSEHLG  360
GYIDYCQGVP QQFESFNGIT GSQLVPYSNE IPVNHLQLGQ DCMVDDICQY PDIMRTLATR  420
VQNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19661221471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5906972e-79JX590697.1 Gossypium hirsutum clone NBRI_GE25669 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467431.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A0D2Q8N40.0A0A0D2Q8N4_GOSRA; Uncharacterized protein
STRINGGorai.002G187500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]