PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G208900.1

Common Name

B456_002G208900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 222aa MW: 24683.7 Da PI: 7.9367

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G208900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.1	1.5e-15	7	39	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C +Cg +TplWR+gp ++ LCnaCG +yr+ Gorai.002G208900.1 7 CFHCGIDNTPLWRNGPPEKPVLCNACGSRYRLG 39 **************88888********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	9.9E-10	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.76E-11	5	46	No hit	No description
CDD	cd00202	1.50E-14	6	60	No hit	No description
PROSITE profile	PS50114	11.2	7	57	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	7.6E-13	7	39	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	2.3E-13	7	39	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MKKQGPCFHC GIDNTPLWRN GPPEKPVLCN ACGSRYRLGK PLENYIPKST LQIIQKKKRK 60 AVPKSIVTNN GNASYSSSAM GDYASSESST AHNLNFCSIK QENLDDDFHP VEDLGSSWRN 120 HSRKRSAVVY NSLTTIQKLE RDLQKILRHE PHLFNGVESQ DDVLIYNVNI NNLQIPSKEI 180 GLGTILLNDF PVSSPPSSHH QDEQEIEVSP PNHAPTAPSY P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467721.1	1e-164	PREDICTED: GATA transcription factor 26-like
TrEMBL	A0A0D2Q9W6	1e-163	A0A0D2Q9W6_GOSRA; Uncharacterized protein
STRING	Gorai.002G208900.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18902	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.1	2e-25	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Gorai.002G208900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]