PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G213500.1
Common NameB456_002G213500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 396aa    MW: 45035.7 Da    PI: 9.2706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G213500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.95.4e-231562249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +i+++sn qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k++ +
  Gorai.002G213500.1 15 KIKDESNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGNKVFSF 62
                        599*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-33665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.6666IPR002100Transcription factor, MADS-box
CDDcd002651.00E-33780No hitNo description
SuperFamilySSF554551.44E-27779IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-18828IPR002100Transcription factor, MADS-box
PfamPF003192.4E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVKKTLGRQK IEMVKIKDES NLQVTFSKRR SGLFKKASEL CTLCGVEIAI IVFSPGNKVF  60
SFGHPDVENI LNRYVHNTKD TSPTWQLIEA HRNAIILRLN AQLTEMMSQI EAQKKRGEEL  120
DKMRKASQEQ NWWESPIEEL SLPQLQFLRS AMAELKKIVQ REAEQLIIQN TNCQQLFPGS  180
SSQGTNTNSK QFFIGSSSQE MDTNRQQFFP GSSSQGMDTN PQQFFTGSSS QGMDTNPQQF  240
FTGSSSQGMN TNPQHPPQFF SPPQHPPQFF TRSSSQGMDT NPFTRSSIQG MDTNPQLFNE  300
KSSQGMETNP QHPPQFFTGS SIQGMDTNPQ QFFTRIQSKG WIQIHDSFSM RSQAKEWIQI  360
RNSFSLEAQS KRWIEIHHCF SLGVQAKEGL LIMRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A5e-17774168Myocyte-specific enhancer factor 2A
3mu6_B5e-17774168Myocyte-specific enhancer factor 2A
3mu6_C5e-17774168Myocyte-specific enhancer factor 2A
3mu6_D5e-17774168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469150.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
TrEMBLA0A0D2NR260.0A0A0D2NR26_GOSRA; Uncharacterized protein
STRINGGorai.002G213500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2474734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-64AGAMOUS-like 62
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]