PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G214700.7
Common NameB456_002G214700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 272aa    MW: 31284.5 Da    PI: 5.7725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G214700.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-066488123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        + Cp  dCgk++ + + Lk+Hi +H
  Gorai.002G214700.7 64 HICPypDCGKRYAHEYKLKNHIASH 88
                        679999*****************96 PP
2zf-C2H214.40.00011127152123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   C k + + + Lk H+r+ H
  Gorai.002G214700.7 127 YACPyeGCEKAYIHEYKLKLHLRReH 152
                         89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.04E-94491No hitNo description
Gene3DG3DSA:3.30.160.601.8E-115090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4946493IPR007087Zinc finger, C2H2
SMARTSM003550.00286488IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806689IPR007087Zinc finger, C2H2
SuperFamilySSF576676.91E-6122150No hitNo description
Gene3DG3DSA:3.30.160.602.4E-9122150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0089127152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972127157IPR007087Zinc finger, C2H2
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEKDNMFVTG RVVERNFWIV QNLKDTSSFT LERETSYAHM KVVAFSLDFN LRSHMKTHSQ  60
ENYHICPYPD CGKRYAHEYK LKNHIASHHE KNTTPEVAKY APPLEKIVKT PKPTGGAYGS  120
ASSDRPYACP YEGCEKAYIH EYKLKLHLRR EHPGHMSDEN AENATANVDN EMDEASDQDA  180
YAGKRVNGKS QKQQSRAKPN LKMPPAKVAR QKGSSPSPAT LPIPKKQWPI KEQVFEEEDS  240
EETEEDRDNV DDGWRYRENN EDDDEETEYE D*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467798.11e-168PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467799.11e-168PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467801.11e-168PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_012467802.11e-168PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L37e-83YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0D2RAB00.0A0A0D2RAB0_GOSRA; Uncharacterized protein
STRINGGorai.002G214700.11e-167(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-84C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]