PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G215500.1

Common Name

B456_002G215500, LOC105786091

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 132aa MW: 15248.6 Da PI: 10.1742

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G215500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.3	3.3e-14	15	96	13	88
TT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 13 sgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++r+++p k + ++ +g+ e ++ ++de g +W++++ ++k ++ vltkGW+eFv ++L D v F++d++ Gorai.002G215500.1 15 QKRMTIPSKSL-NCfpalSGN-EHMVDFDVRDECGHVWKFRIYTrksNNKYRKPVLTKGWREFVCRKELSIDDKVEFYMDKQqA 96 4689****9.455998555.46689***********444445555559**********************885433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.051	3	110	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.0E-16	4	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.59E-14	4	106	No hit	No description
SuperFamily	SSF101936	2.16E-13	6	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.8E-11	15	96	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MATIVSKRLR KTDIQKRMTI PSKSLNCFPA LSGNEHMVDF DVRDECGHVW KFRIYTRKSN 60 NKYRKPVLTK GWREFVCRKE LSIDDKVEFY MDKQQADGSA EYRVTVQKAV KVFGAIFAHK 120 PFPGEVSNDI V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467821.1	3e-95	PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBL	A0A0D2ME76	7e-94	A0A0D2ME76_GOSRA; Uncharacterized protein
STRING	Gorai.002G215500.1	1e-94	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16920	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	3e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G215500.1
Entrez Gene	105786091

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]