PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G224900.2
Common NameB456_002G224900, LOC105786184
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 226aa    MW: 23388.6 Da    PI: 9.1463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G224900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-083055227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+lC+ f+    CkyGd+C+FaHg+
  Gorai.002G224900.2 30 KTRLCNKFSGPEGCKYGDKCHFAHGE 55
                        89*******999************96 PP
2zf-CCCH38.71.7e-12192216126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++fa+ G C +G+rC+FaHg
  Gorai.002G224900.2 192 YKTKLCDNFAK-GSCTFGERCHFAHG 216
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.612856IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-132859IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-42855IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-82859IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-53055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.94E-1592168IPR004088K Homology domain, type 1
SMARTSM003221.1E-1297167IPR004087K Homology domain
PROSITE profilePS5008414.65598162IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.8E-1798167IPR004088K Homology domain, type 1
PfamPF000134.1E-12100164IPR004088K Homology domain, type 1
CDDcd001053.71E-15100162No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-16187222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-9190221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558191218IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8191217IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLAPAVPP ASRNVTATAA VPHGSGSQVK TRLCNKFSGP EGCKYGDKCH FAHGEWELGK  60
PIAPSQDDPR SMAPLPGRMG SRMEPPPPSG PAATFGASAT AKISVDASLA GAIIGKGGVH  120
SKQICRQTGA KLSIREHESD PSLRNIELEG SFEQIKEASA MVRELISSLG PVPGPAKTPG  180
AHGGQGHPGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016707568.11e-164PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ32e-78C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0D2NRH21e-163A0A0D2NRH2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8L2J01e-163A0A1U8L2J0_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGGorai.002G224900.11e-163(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-69C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]