PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G244000.1
Common NameB456_002G244000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 199aa    MW: 22926.6 Da    PI: 6.5646
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G244000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.2e-2067120356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+ ++t++ql+ Le+ F+++++++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  Gorai.002G244000.1  67 KKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 120
                         66779************************************************9 PP
2HD-ZIP_I/II123.31.2e-3966156191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+++q+ +LE+sF+ee+kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk++yd ++ e+++L++ev eL+  l
  Gorai.002G244000.1  66 NKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHSYNTLKHEYDIISIEKQKLQDEVMELKGML 156
                         59*************************************************************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-2054124IPR009057Homeodomain-like
PROSITE profilePS5007117.68662122IPR001356Homeobox domain
SMARTSM003895.7E-1964126IPR001356Homeobox domain
PfamPF000461.5E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-2268129IPR009057Homeodomain-like
CDDcd000861.22E-1670123No hitNo description
PRINTSPR000312.9E-593102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5102118IPR000047Helix-turn-helix motif
PfamPF021831.9E-8122156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDWDGTIRPF ISRLEPSLNF PSNYNYNQYP EGVEDMNNQG FEEAGNGLVP DLNMNGFMNN  60
GKGNNNKKKR LTSDQLDSLE RSFQEENKLD PDRKMKLSKE LGLQPRQIAV WFQNRRARWK  120
AKQLEHSYNT LKHEYDIISI EKQKLQDEVM ELKGMLVEQA TRNQVSTVYK EISGGEIIES  180
SSIRSSNKTS IAGNDYIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5843763e-42JX584376.1 Gossypium hirsutum clone NBRI_GE17666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469169.11e-124PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-43ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0D2RC051e-144A0A0D2RC05_GOSRA; Uncharacterized protein
STRINGGorai.002G244000.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-41homeobox 51
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]