PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G247000.2
Common NameB456_002G247000, LOC105786410
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 353aa    MW: 38903.4 Da    PI: 6.7458
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G247000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.41.1e-27101182271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Gorai.002G247000.2 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpgnniaspdqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 182
                         689********...*****999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.9E-1343352IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.9E-4696188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.0E-36100182IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-25102182IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.4E-21103183IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.43E-44187290IPR014889Transcription factor DP, C-terminal
SMARTSM011387.3E-73189350IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.54E-43189301No hitNo description
PfamPF087814.2E-41190318IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVTGSNSVQN HNHQEDGDQN QTKRGASRSW GTTVSGQSVS TSGSVGSPSS RCELAMATPA  60
SENTFLRLNH LDIHGDDAGS QGAVGSKKKK RGQRAVGGDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVADE LVAEFTDPGN NIASPDQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW  180
KGLPRTSLSD IEDLKTERLG LRNRIEKKAA YLHELEEQFV GLQNLIQRNE QLYSSGNPPN  240
GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNYVLKAM KFCERPGSDE  300
MAHNFSADGE GSSMSAMYQQ QIVPPPMTNT PGRPPTSPPL PGILKARVKH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-4194187193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.21561e-110flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488306871e-110
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468274.10.0PREDICTED: transcription factor-like protein DPB isoform X3
SwissprotQ9FNY21e-166DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D2MFM00.0A0A0D2MFM0_GOSRA; Uncharacterized protein
STRINGGorai.002G247000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-151Transcription factor DP
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]