PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G247800.2

Common Name

B456_002G247800, LOC105786415

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 480aa MW: 53800.8 Da PI: 8.8002

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G247800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	350	397	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++q+G g+W+ I + + Rt+ +++++w+++l Gorai.002G247800.2 350 WTLAEVIKLVDGIAQYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 397 ******************************99**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.078	342	401	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	342	401	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-8	346	399	IPR001005	SANT/Myb domain
CDD	cd11660	1.03E-17	348	398	No hit	No description
SuperFamily	SSF46689	1.05E-15	348	407	IPR009057	Homeodomain-like
Pfam	PF00249	9.8E-7	350	397	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MRTERKPHLI KKPADVKRQS VDESLGPGLK DEATEVEHLL VEPKSEHVSV DRVFCFGKEN 60 IEKHLKMEDF SCAFDYGWKI GSGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIQAAHDL 120 SSACEDFLLD IEFPEKFSEL DCGPYVGSNL RNSSSESHSP GGSSNSVGGM SESSIVTVQE 180 SNSKNGVLGK MVNCDIHHTI RSECGCQAPV METIRPSKEH GQDFVESDDE KPLVSFIVSN 240 KKVKSSVKVT KGGTLLRQKR LRKPTKRYIE EFSRNSTTSG KNKCLKVRSQ EEFSQVPSES 300 QSRRGRPKKI MPKMEFESDC ELSASESEDE CKRTKRFKTA CDRRKHQRMW TLAEVIKLVD 360 GIAQYGVGRW TDIKKLLFAS SAYRTPVDLR DKWRNLLRSS SAHKHNRKEG ETNMKHYVRP 420 LPKTVVCRIR ELATIHPYPK ARSPNLSSIN SDPSSKQPTT TKAAPINTHG RNLRGKKCN*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MRTERKPHLI KKPADVKRQS VDESLGPGLK DEATEVEHLL VEPKSEHVSV DRVFCFGKEN  60
IEKHLKMEDF SCAFDYGWKI GSGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIQAAHDL  120
SSACEDFLLD IEFPEKFSEL DCGPYVGSNL RNSSSESHSP GGSSNSVGGM SESSIVTVQE  180
SNSKNGVLGK MVNCDIHHTI RSECGCQAPV METIRPSKEH GQDFVESDDE KPLVSFIVSN  240
KKVKSSVKVT KGGTLLRQKR LRKPTKRYIE EFSRNSTTSG KNKCLKVRSQ EEFSQVPSES  300
QSRRGRPKKI MPKMEFESDC ELSASESEDE CKRTKRFKTA CDRRKHQRMW TLAEVIKLVD  360
GIAQYGVGRW TDIKKLLFAS SAYRTPVDLR DKWRNLLRSS SAHKHNRKEG ETNMKHYVRP  420
LPKTVVCRIR ELATIHPYPK ARSPNLSSIN SDPSSKQPTT TKAAPINTHG RNLRGKKCN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.589	0.0	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48780213	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468284.1	0.0	PREDICTED: uncharacterized protein LOC105786415 isoform X2
TrEMBL	A0A0D2QBL7	0.0	A0A0D2QBL7_GOSRA; Uncharacterized protein
STRING	Gorai.002G247800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-25	TRF-like 6

Link Out ? help Back to Top
Phytozome	Gorai.002G247800.2
Entrez Gene	105786415

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]