PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G247800.4

Common Name

B456_002G247800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 416aa MW: 46470.4 Da PI: 8.8884

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G247800.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.2e-08	284	331	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++q+G g+W+ I + + Rt+ +++++w+++l Gorai.002G247800.4 284 WTLAEVIKLVDGIAQYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 331 ******************************99**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.3E-12	276	335	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.078	276	335	IPR017930	Myb domain
SMART	SM00717	1.3E-8	280	333	IPR001005	SANT/Myb domain
CDD	cd11660	4.03E-18	282	332	No hit	No description
SuperFamily	SSF46689	8.97E-16	282	341	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-7	284	331	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEDFSCAFDY GWKIGSGGLD SIHGQGGDDL KLEVLDGLLD EVDEVDDIQA AHDLSSACED 60 FLLDIEFPEK FSELDCGPYV GSNLRNSSSE SHSPGGSSNS VGGMSESSIV TVQESNSKNG 120 VLGKMVNCDI HHTIRSECGC QAPVMETIRP SKEHGQDFVE SDDEKPLVSF IVSNKKVKSS 180 VKVTKGGTLL RQKRLRKPTK RYIEEFSRNS TTSGKNKCLK VRSQEEFSQV PSESQSRRGR 240 PKKIMPKMEF ESDCELSASE SEDECKRTKR FKTACDRRKH QRMWTLAEVI KLVDGIAQYG 300 VGRWTDIKKL LFASSAYRTP VDLRDKWRNL LRSSSAHKHN RKELQGETNM KHYVRPLPKT 360 VVCRIRELAT IHPYPKARSP NLSSINSDPS SKQPTTTKAA PINTHGRNLR GKKCN*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEDFSCAFDY GWKIGSGGLD SIHGQGGDDL KLEVLDGLLD EVDEVDDIQA AHDLSSACED  60
FLLDIEFPEK FSELDCGPYV GSNLRNSSSE SHSPGGSSNS VGGMSESSIV TVQESNSKNG  120
VLGKMVNCDI HHTIRSECGC QAPVMETIRP SKEHGQDFVE SDDEKPLVSF IVSNKKVKSS  180
VKVTKGGTLL RQKRLRKPTK RYIEEFSRNS TTSGKNKCLK VRSQEEFSQV PSESQSRRGR  240
PKKIMPKMEF ESDCELSASE SEDECKRTKR FKTACDRRKH QRMWTLAEVI KLVDGIAQYG  300
VGRWTDIKKL LFASSAYRTP VDLRDKWRNL LRSSSAHKHN RKELQGETNM KHYVRPLPKT  360
VVCRIRELAT IHPYPKARSP NLSSINSDPS SKQPTTTKAA PINTHGRNLR GKKCN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.589	0.0	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48780213	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468282.1	0.0	PREDICTED: uncharacterized protein LOC105786415 isoform X1
Refseq	XP_012468283.1	0.0	PREDICTED: uncharacterized protein LOC105786415 isoform X1
TrEMBL	A0A0D2NSH3	0.0	A0A0D2NSH3_GOSRA; Uncharacterized protein
STRING	Gorai.002G247800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-24	TRF-like 6

Link Out ? help Back to Top
Phytozome	Gorai.002G247800.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]