PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G256500.1
Common NameB456_002G256500, LOC105787367
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 147aa    MW: 16100.8 Da    PI: 5.6352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G256500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-053052123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C+k Fs+   L  H++ H
  Gorai.002G256500.1 30 YTCSFCKKGFSNAQALGGHMNIH 52
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-72656No hitNo description
Gene3DG3DSA:3.30.160.607.1E-62854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5723057IPR007087Zinc finger, C2H2
SMARTSM003550.00423052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
METKHPKLEK PDQIVWSLEE EDVSIHSKSY TCSFCKKGFS NAQALGGHMN IHRKDRAKLR  60
ESFEENVLIS SDITLGLVQV QDRYLISETI LESSGEKKVP RDDDNGSGAS PKGKDGVGEN  120
SRSSHGSSSQ VELDLELRLG PDSRAS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}.
Functional Description ? help Back to Top
Source Description
UniProtActivation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469175.11e-103PREDICTED: transcriptional regulator TAC1-like
SwissprotQ9SR341e-16TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLA0A0D2QJ631e-102A0A0D2QJ63_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SM461e-102A0A2P5SM46_GOSBA; Uncharacterized protein
STRINGGorai.002G256500.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-17C2H2 family protein
Publications ? help Back to Top
  1. Ren S,Johnston JS,Shippen DE,McKnight TD
    TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.
    Plant Cell, 2004. 16(11): p. 2910-22
    [PMID:15486103]
  2. Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD
    Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1.
    Plant Cell, 2007. 19(1): p. 23-31
    [PMID:17220202]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]