PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G003900.1

Common Name

B456_003G003900, LOC105787414

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 229aa MW: 26514 Da PI: 8.4171

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G003900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146	2e-45	11	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdke 91 pGfrFhPt+eelv++yLk+ v gk+l + ++i ++iy++ PwdLp ++k +e+ewyfF++rd+++ + gk++nr+t++gyWkatg+d++ Gorai.003G003900.1 11 LPGFRFHPTEEELVNYYLKETVLGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRSGHgGKKPNRTTERGYWKATGSDRQ 100 69**********************999.99***********888999*******9999758899*************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +gl+ktLvfy+g+ap+g++tdWvm+eyrl Gorai.003G003900.1 101 IRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139 9874455569*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-52	10	157	IPR003441	NAC domain
PROSITE profile	PS51005	52.473	10	157	IPR003441	NAC domain
Pfam	PF02365	6.5E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MENIISPEII LPGFRFHPTE EELVNYYLKE TVLGKNLYCD IIGFLNIYNH YPWDLPGMAK 60 IGEREWYFFV QRDTRSGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY 120 TGKAPNGNRT DWVMNEYRLS DTSILREDIV LCKIYRKATS LRVFEQRAEE QALSSYVAQN 180 NNITVPLPLQ HHDYGTNMAQ ADSDEHGPSS YSAWTTMTEC FTQSKKNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-41	10	157	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847252	0.0	KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469247.1	1e-173	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X1
Swissprot	Q10S65	1e-77	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0D2MHI2	1e-172	A0A0D2MHI2_GOSRA; Uncharacterized protein
STRING	Gorai.003G003900.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-83	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Gorai.003G003900.1
Entrez Gene	105787414

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]