PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G011200.8

Common Name

B456_003G011200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

DBB

Protein Properties

Length: 137aa MW: 15058.7 Da PI: 8.05

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G011200.8	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.3	6.4e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++ fC ++ lC++C ++ H Gorai.003G011200.8 4 LCDACESAPAIVFCAADEAALCHSCDEKVH 33 6**************************998 PP
2	zf-B_box	26.7	1.2e-08	53	91	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H Gorai.003G011200.8 53 VPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkktH 91 689*************************99996555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.21	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.27E-6	3	45	No hit	No description
SMART	SM00336	1.4E-6	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.9E-6	4	42	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.56	51	103	IPR000315	B-box-type zinc finger
SMART	SM00336	2.3E-10	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.0E-6	53	91	IPR000315	B-box-type zinc finger
CDD	cd00021	8.83E-6	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MRILCDACES APAIVFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLANP SAVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD VIVHVGGKKT HGRYLLLRQR VEVLSSLLLS LKVKSNNVFV 120 VPPRVFIRFW FYVVSG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469363.1	2e-70	PREDICTED: B-box zinc finger protein 19-like isoform X2
Refseq	XP_016692436.1	2e-70	PREDICTED: B-box zinc finger protein 19-like isoform X2
Swissprot	C0SVM5	9e-62	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A0D2NUP9	1e-94	A0A0D2NUP9_GOSRA; Uncharacterized protein
STRING	Gorai.003G011200.1	1e-67	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	3e-57	DBB family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G011200.8

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]