PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G015400.2
Common NameB456_003G015400, LOC105787543
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 601aa    MW: 65805.6 Da    PI: 4.771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G015400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.32.5e-1132336002374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++Ll+cA+ +++++ e+a + La+l+e +s++gdp++R+a+yfteAL++rl++   ++ + l++ et+   s++ + ++k++++++P+ k
  Gorai.003G015400.2 233 LKALLDCAT-LADSEPERAIKSLAKLKESVSEHGDPTERVAFYFTEALHSRLSH---QTDQRLTMIETT---SEDFTLSYKALNDACPYSK 316
                         689*****9.5667999999*********************************9...666677777777...89999************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL++f + l+++fef++
  Gorai.003G015400.2 317 FAHLTANQAILEATDRASKIHIVDFGIVQGVQWAALLQALATRSAGKPtRIRISGIPAPVLGstPAPSLYATGNRLRDFSKLLDLNFEFEP 407
                         ********************************************77666*********998888999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + + +++l+ +++rv+++E+laVn++lql++lld++ +  +   + L l ksl+Pk+v++ e ea++n+  Fl+rf +al+yysa+f+sl
  Gorai.003G015400.2 408 -ILTPVTELTGSSFRVDEDEVLAVNFMLQLYNLLDSTPAAVE---TALALAKSLNPKIVTLGEYEASLNRVGFLNRFKNALRYYSAVFESL 494
                         .7999*****************************88888888...9********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv. 359
                         e +lpr+s eri vE++llgr++  v+  e+a  +rer+e +e+W+  +e +GF++v+ls++a +qak ll +++ s  y++ e++  ++ 
  Gorai.003G015400.2 495 EPNLPRDSPERIQVEKHLLGRKVAGVIGREEAGtQRERMEDKEQWKILMEISGFETVTLSHYAISQAKILLWNYNySSSYSLIESQPGFLs 585
                         ****************************99987699***************************************9999**9999988888 PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l W++ pL++vS+Wr
  Gorai.003G015400.2 586 LAWNEVPLLTVSSWR 600
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.117206578IPR005202Transcription factor GRAS
PfamPF035148.7E-111233600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAYMCADNGN LMAIAQQVIK QKQEQEQQQQ QQQQQQQQQQ LLGLNPFSLN PWSSTTHHGV  60
SSSGNVGYGL TGPGFTDPFQ GDAGEGFQFP NMEHHHSIGF RFPDFGGGAG GEFDSDEWMD  120
SLMNGGGHST DTSNLPSGCD AWQNSADFGI YGADPFTACP SRLTLTCSPP SNLNRVIPTT  180
TLPAWPPSSP PPPPQVTVEE TKTSSPQNQN PTINDGAGIS SGSPETDLSP PLLKALLDCA  240
TLADSEPERA IKSLAKLKES VSEHGDPTER VAFYFTEALH SRLSHQTDQR LTMIETTSED  300
FTLSYKALND ACPYSKFAHL TANQAILEAT DRASKIHIVD FGIVQGVQWA ALLQALATRS  360
AGKPTRIRIS GIPAPVLGST PAPSLYATGN RLRDFSKLLD LNFEFEPILT PVTELTGSSF  420
RVDEDEVLAV NFMLQLYNLL DSTPAAVETA LALAKSLNPK IVTLGEYEAS LNRVGFLNRF  480
KNALRYYSAV FESLEPNLPR DSPERIQVEK HLLGRKVAGV IGREEAGTQR ERMEDKEQWK  540
ILMEISGFET VTLSHYAISQ AKILLWNYNY SSSYSLIESQ PGFLSLAWNE VPLLTVSSWR  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1482296001375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5255011e-111HQ525501.1 Gossypium herbaceum clone NBRI_D_EYT27PB02CZHKW simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469438.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_012469439.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0D2QLT30.0A0A0D2QLT3_GOSRA; Uncharacterized protein
STRINGGorai.003G015400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]