PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G016500.1
Common NameB456_003G016500, LOC105787554
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 534aa    MW: 60614.9 Da    PI: 6.6572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G016500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.99.5e-941735322374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         +e L+++A+++++++l+laq +Larl ++ +sp+g+p+qR+a+yf+eAL + l++   +l    +++ +s+++ +++++a+k+fs + Pi+
  Gorai.003G016500.1 173 IEELVRAADCFDTQELQLAQVILARLGQRlRSPSGKPLQRAAFYFKEALLSLLTG---GLT--RTTRLSSWNDIVQTIKAYKAFSGINPIP 258
                         678*************************99*************************...444..4667777789****************** PP

                GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          fsh+t+Nqa++eav       +HiiDfdi+ G+Q+++L++++ +R  ++   +R+T+v+++e   + e++ ++++L +fA+el+++f+++
  Gorai.003G016500.1 259 MFSHFTTNQALMEAVLDGssPLIHIIDFDIGFGGQYASLMREMFERHdHSRKFIRVTAVVPEE--YAIETRLIKDNLVQFASELKLRFQIE 347
                         **************854436889************************556669********66..99999********************* PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalf 268
                         +++ +++e+l+++++++  gE++a+ l+  ++r l   ++l    +++L+ +++++P++vv+v++e  ++ +++sF + f++ le+y+++f
  Gorai.003G016500.1 348 FVLLRTFEMLSFKSFKFIDGEKTAILLSPLIFRSL--GLNL----TAFLNDLRRVNPTIVVFVDNEvwMESGTTSFRKNFVNGLEFYAMMF 432
                         *****************************999999..4444....56*******************76677999***************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         +sl+a +  + e+ +k+E  ll+++i  +v ++ ++      t+  Wrer++ aG+++v+ls+ a+ qa++ll kv+++g++v +++++lv
  Gorai.003G016500.1 433 ESLDAAVVGNGEWVRKIETLLLRPRILAAVETAARS------TAPPWRERFRGAGMRAVHLSQLAEFQAECLLGKVQVRGFHVAKRQAELV 517
                         *******9999*******************999887......99*********************************************** PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l+W + +Lv++SaWr
  Gorai.003G016500.1 518 LCWYESALVATSAWR 532
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.886146512IPR005202Transcription factor GRAS
PfamPF035143.3E-91173532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MRVPVSSPQS NHCQSPKPNN NTNTSSTRNI SFHGATINSV STSCYEPTSV LELRRSPSPG  60
HDNPVDHHQH QQQQQQHQAP LEWDEHVLRN MDWDSIMKDL GLDDESVPSI KTIPPQENHI  120
QNLPEFTSCE LTHPTEFNNL YDFYPSHNID ISNTTTYGFN NMGNFINSGF DFIEELVRAA  180
DCFDTQELQL AQVILARLGQ RLRSPSGKPL QRAAFYFKEA LLSLLTGGLT RTTRLSSWND  240
IVQTIKAYKA FSGINPIPMF SHFTTNQALM EAVLDGSSPL IHIIDFDIGF GGQYASLMRE  300
MFERHDHSRK FIRVTAVVPE EYAIETRLIK DNLVQFASEL KLRFQIEFVL LRTFEMLSFK  360
SFKFIDGEKT AILLSPLIFR SLGLNLTAFL NDLRRVNPTI VVFVDNEVWM ESGTTSFRKN  420
FVNGLEFYAM MFESLDAAVV GNGEWVRKIE TLLLRPRILA AVETAARSTA PPWRERFRGA  480
GMRAVHLSQL AEFQAECLLG KVQVRGFHVA KRQAELVLCW YESALVATSA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2417853125378Protein SCARECROW
5b3h_A2e-2417853124377Protein SCARECROW
5b3h_D2e-2417853124377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469454.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D2NUZ60.0A0A0D2NUZ6_GOSRA; Uncharacterized protein
STRINGGorai.003G016500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-168GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]