PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G016600.1
Common NameB456_003G016600, LOC105787556
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 219aa    MW: 24947.3 Da    PI: 5.9488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G016600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1958112357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Gorai.003G016600.1  58 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 112
                         45699************************************************95 PP
2HD-ZIP_I/II1185.1e-3858149293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkr+ls+eqv lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ ++ ++ e++rLe+ev +L+++l+
  Gorai.003G016600.1  58 KKRKLSQEQVDLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTIHEGVVVEKCRLESEVLKLKDQLR 148
                         9****************************************************************************************98 PP

         HD-ZIP_I/II  93 e 93 
                         e
  Gorai.003G016600.1 149 E 149
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.82753113IPR001356Homeobox domain
SMARTSM003891.8E-1756117IPR001356Homeobox domain
SuperFamilySSF466892.57E-1758120IPR009057Homeodomain-like
PfamPF000461.2E-1658112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-2060120IPR009057Homeodomain-like
CDDcd000863.74E-1560114No hitNo description
PRINTSPR000311.4E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.4E-593109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTTQMKELED PMALITQMYP CIYTQVAPQQ GEISKPRRRR KKNKGGESGA ATAAETAKKR  60
KLSQEQVDLL ELNFGNEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS  120
KLKTIHEGVV VEKCRLESEV LKLKDQLREA EKEIQGLTER VDGVSSNSPS SSSVLSMEAV  180
DPPPFLGEFG AQGFEDQDVF YIGQNSYING MEWMNLYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13960RKKNKGGESGAATAAETAKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469456.11e-162PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232083e-77ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2QEE41e-161A0A0D2QEE4_GOSRA; Uncharacterized protein
STRINGGorai.003G016600.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-67homeobox protein 40
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]