PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G018100.1
Common NameB456_003G018100, LOC105787569
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 681aa    MW: 74249.4 Da    PI: 7.3049
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G018100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-094755121954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Gorai.003G018100.1 475 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 512
                         664559******************************88 PP
2BELL122.32.1e-39335406172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLls+l+eVd+rY++y+eq+qt+++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+
  Gorai.003G018100.1 335 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQTIVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 406
                         589******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-78265404IPR006563POX domain
PfamPF075264.5E-50270403IPR006563POX domain
PROSITE profilePS5007112.455453516IPR001356Homeobox domain
CDDcd000868.43E-13456517No hitNo description
SMARTSM003891.2E-9456520IPR001356Homeobox domain
SuperFamilySSF466892.82E-17457523IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-29459522IPR009057Homeodomain-like
PfamPF059203.4E-18473512IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MASQGYHHHH HHHHHQAAAG IFSFSNGFER SAINHQEQQQ QLVQQIRRDK LRIQGFEPPP  60
PPLVGIEEEE SNALPVYEPT GMLSSEMFYF PSSVTVTAAS TELLDQSLQA NYRGQLGESK  120
NHRDSLAQQQ QLPSINADSA AAMHLFLMNP QTRSPSPPPP QPQPPPPGFQ GGAFPPQFTW  180
VPDNSHEGGH GQGQGLSLSL SSLQHLEAAK LYYNQGGAAG GADGGGSSSA TATAQFQYKH  240
DHHSPHQPLG LVQNHQFHVG YNSSLGMVNV LRNSKYTKPA QELLEEFCSV GSGRFKKKKL  300
GKNNINPSSY PSNDGTTTNG SSSSTKDLPP FSASDRIEHQ RRKVKLLSML DEVDRRYNHY  360
CEQMQTIVNS FDLVMGYGAA IPYTALAQKA MSRHFRCLKD AISSQLKHSC ELLGEKDGVG  420
TSGITKGETP RLRMLEQSLR QQKAFHQIGM MEHEAWRPQR GLPERSVNIL RAWLFEHFLH  480
PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQESKEGG DNNKGTRTNN  540
NAASTPSTTA VGGAGGASPP PQPPENDPSL IGTNTTQCFS ENQLTNTGTS TTNTSTATEV  600
TPPVSDSDIH QRLLAVTDDT CHRGSNTIVG TITAGNTDIG STLIRFGTTG GDVSLTLGLR  660
HAGNMPDKAS SFSVTDFGGC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16462520563Homeobox protein Meis2
3k2a_B2e-16462520563Homeobox protein Meis2
4xrm_A2e-16462520563Homeobox protein Meis2
4xrm_B2e-16462520563Homeobox protein Meis2
4xrs_A2e-16462519158Homeobox protein Meis1
4xrs_B2e-16462519158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6225441e-145JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469479.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-161BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A0D2QLZ50.0A0A0D2QLZ5_GOSRA; Uncharacterized protein
STRINGGorai.003G018100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-146BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]