PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020100.1
Common NameB456_003G020100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 247aa    MW: 27520.9 Da    PI: 8.8333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-18142237199
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+ vl ps+v+ ++ l++p +fa+++   +     +k+++   ++g+sW v +  + + ++  ++l +GW +F+ +n+L++gD++vF+l+g
  Gorai.003G020100.1 142 FVIVLQPSHVHGNK-LSVPMNFARKYltmM-----HKKVIHLLSDGNSWPVIY--DPRFEWsyVFLCNGWHRFAVDNNLEVGDVCVFELTG 224
                         55666677777766.***********7532.....235666667*********..999999989999***********************9 PP

                         SSEE..EEEEE-S CS
                  B3  87 rsefelvvkvfrk 99 
                           e++++v++++k
  Gorai.003G020100.1 225 GIETSMKVTIYKK 237
                         9777799999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.038183IPR003340B3 DNA binding domain
CDDcd100172.22E-11180No hitNo description
SuperFamilySSF1019362.94E-11182IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-11280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-25134237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-25135236IPR015300DNA-binding pseudobarrel domain
CDDcd100177.51E-25140236No hitNo description
SMARTSM010192.1E-12141238IPR003340B3 DNA binding domain
PROSITE profilePS5086313.465141238IPR003340B3 DNA binding domain
PfamPF023623.2E-17142237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPCNFVKENL MKKHCSVILC NSSGKTWIAT FKQRKIGKKL TSYLIAGCGT FARDNNIQVG  60
DVCASELINS IHISFKVVIY QGQHANCHQS LAVTDVFHLV KRKAPSCAPS YASQGCPEPL  120
TALEKAKAFQ TAGAFKSENP FFVIVLQPSH VHGNKLSVPM NFARKYLTMM HKKVIHLLSD  180
GNSWPVIYDP RFEWSYVFLC NGWHRFAVDN NLEVGDVCVF ELTGGIETSM KVTIYKKQAI  240
EDENLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1512023627141B3 domain-containing transcription factor VRN1
4i1k_B1e-1512023627141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5849079e-83JX584907.1 Gossypium hirsutum clone NBRI_GE18328 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638182.11e-160PREDICTED: B3 domain-containing protein Os03g0619600-like
TrEMBLA0A0D2QEJ10.0A0A0D2QEJ1_GOSRA; Uncharacterized protein
STRINGGorai.003G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3633122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-16B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]