PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020300.1
Common NameB456_003G020300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 143aa    MW: 15982.9 Da    PI: 7.9226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14361082199
                         HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          f+++hg++  ++   +l  +sg +W+v+l  +k++g+++l++GW eF +   L+ g  +vF++dg+s+f  +v +f+k
  Gorai.003G020300.1  36 LFVKNHGNSMSSP--AMLSVPSGAVWKVEL--TKSDGKIWLENGWLEFSNHYSLDIGHLLVFRYDGNSNF--RVIIFDK 108
                         5888887775555..9999***********..**********************************9999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1818109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1919116IPR015300DNA-binding pseudobarrel domain
CDDcd100179.96E-1420107No hitNo description
SMARTSM010193.0E-1022109IPR003340B3 DNA binding domain
PfamPF023622.4E-1136108IPR003340B3 DNA binding domain
PROSITE profilePS5086311.54737109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MASSSHQQGN SHLKFISSSP YFLKIILQDT IQNGKLFVKN HGNSMSSPAM LSVPSGAVWK  60
VELTKSDGKI WLENGWLEFS NHYSLDIGHL LVFRYDGNSN FRVIIFDKSA SEIQYPYTSN  120
NHSRSSEILK LNINESKDDG SI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690612.14e-96PREDICTED: B3 domain-containing transcription factor VRN1-like
SwissprotQ8L3W11e-25VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0D2QM182e-98A0A0D2QM18_GOSRA; Uncharacterized protein
STRINGGorai.003G020300.13e-99(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-28B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]