PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020500.1
Common NameB456_003G020500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 202aa    MW: 22800.8 Da    PI: 10.3692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1522106299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk+    d+ ++g l +p+kf+++hg++        + +++ + W+v+l  +k++g++++++GW eF +   L+ g  +vF++dg+s+f  
  Gorai.003G020500.1  22 FKII-LQDTIQNGKLGIPRKFVRNHGNS--------MSSQQAQAWKVEL--TKCGGKIWFENGWLEFSNHYSLELGHLLVFRYDGNSNF-- 99 
                         5544.468899999********999854........779**********..**********************************9999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v +f++
  Gorai.003G020500.1 100 HVIIFDR 106
                         9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1916107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2017106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-1819105No hitNo description
PROSITE profilePS5086311.3520107IPR003340B3 DNA binding domain
SMARTSM010192.4E-1221107IPR003340B3 DNA binding domain
PfamPF023622.9E-1222106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAASHQQGND HLKFISNSPC FFKIILQDTI QNGKLGIPRK FVRNHGNSMS SQQAQAWKVE  60
LTKCGGKIWF ENGWLEFSNH YSLELGHLLV FRYDGNSNFH VIIFDRTASE IQYPYTSNNQ  120
KQSNEIPKQN INESKTECNG KSGFLAQQVS HNGCPAVKGD KRTNHPVIQR MKGREKVKAL  180
EKAINTFKSK NPFFPGSRSK G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472260.11e-106PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2NV541e-148A0A0D2NV54_GOSRA; Uncharacterized protein
STRINGGorai.003G020500.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-27B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]