PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G021000.1

Common Name

B456_003G021000, LOC105787593

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 248aa MW: 25546.3 Da PI: 8.8761

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G021000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.5e-38	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l cprCdstntkfCyynny+ sqPryfCk+CrryWt+GG+lr++P+Ggg+rkn k+s Gorai.003G021000.1 24 EQEQLLCPRCDSTNTKFCYYNNYNFSQPRYFCKSCRRYWTHGGTLRDIPIGGGTRKNAKRS 84 578899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	21	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MPSSSADQSR RFNKGLNNGA PPPEQEQLLC PRCDSTNTKF CYYNNYNFSQ PRYFCKSCRR 60 YWTHGGTLRD IPIGGGTRKN AKRSRSNIST TTSFSTTNAA ASAATTTTTT TTSYNSFPLP 120 ATPVLLPISA NQGSFSIGGE SKGSNIFGSF TSLLNTQGPG FLALGGFGLG IAPSLDDVGF 180 GLGRGMWPLP CVGDGGAAGG GGGRGNGGAA TGMGNAWQFE GAETGFVGGD CFSWPDLAIS 240 TPANGVK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:8718629}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616606	0.0	JX616606.1 Gossypium hirsutum clone NBRI_GE61393 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469517.1	1e-178	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	1e-60	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A0D2MI68	1e-177	A0A0D2MI68_GOSRA; Uncharacterized protein
STRING	Gorai.003G021000.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-56	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Gorai.003G021000.1
Entrez Gene	105787593

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]