PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G021300.3

Common Name

B456_003G021300, LOC105787594

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 251aa MW: 28830.7 Da PI: 5.8875

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G021300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.4	2.4e-11	225	249	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rFvea+++LGGs+ Gorai.003G021300.3 225 KQRRCWSPELHKRFVEALQKLGGSK 249 79*********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-8	224	249	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-7	225	247	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MELNMDVDLV YVPETVSEFL KQASKIKNGF QRLCKISDYV RRLEDEMKKI DAFKRELPIC 60 MLLLKDVIKR LKEEEMMCKE LGDGSVTIDE GNGKVNKEND GGAGNKRNWL STVQLWNSDS 120 EKVDQNKKPN KVPGLKLGSE EEEEEEQDMF EDPIEFFNNR RFKGQMDKEN LELSLMTPSF 180 DLGSSSPSHN PILKINDNCK TGFGSDQNQT KFQTKHQQDM QNCKKQRRCW SPELHKRFVE 240 ALQKLGGSKG *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ837700	0.0	JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469518.1	0.0	PREDICTED: probable transcription factor KAN3
TrEMBL	A0A0D2QM25	0.0	A0A0D2QM25_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2RFB9	0.0	A0A0D2RFB9_GOSRA; Uncharacterized protein
STRING	Gorai.003G021300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G021300.3
Entrez Gene	105787594

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]