PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G022700.1
Common NameB456_003G022700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 118aa    MW: 13499.9 Da    PI: 10.9229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G022700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-195101196
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                         f+k+l  s + +++rl+lp k++++   +     + lt++de+gr+W + +++r+++    vl++GW +Fvk + Lk gD ++Fkl+ +  
  Gorai.003G022700.1   5 FVKIL--SKTDTEKRLSLPTKYMKHLpRIRRGHAVNLTVMDEQGRQWHFGYTIRRNGHPkPVLSAGWHDFVKGKYLKPGDQIIFKLEANdA 93 
                         88999..77888889********6559666667899***************885554445**************************97745 PP

                         EE..EEEE CS
                  B3  89 efelvvkv 96 
                          + ++++v
  Gorai.003G022700.1  94 AALYTIGV 101
                         55555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.5483105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-20493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17492IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-165102IPR003340B3 DNA binding domain
SMARTSM010198.8E-115102IPR003340B3 DNA binding domain
CDDcd100178.11E-22589No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MALQFVKILS KTDTEKRLSL PTKYMKHLPR IRRGHAVNLT VMDEQGRQWH FGYTIRRNGH  60
PKPVLSAGWH DFVKGKYLKP GDQIIFKLEA NDAAALYTIG VKRRIRLLGT EVWTAVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472265.12e-81PREDICTED: B3 domain-containing transcription factor VAL3-like
TrEMBLA0A0D2QEL43e-82A0A0D2QEL4_GOSRA; Uncharacterized protein
STRINGGorai.003G022700.15e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2207145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.14e-12VP1/ABI3-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]