PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G023300.2

Common Name

B456_003G023300, LOC105787607

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 170aa MW: 19262.5 Da PI: 4.347

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G023300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7.1e-05	98	139	11	45
HHHHHHHHHH.....HSSS--HHHHHHHHHHC..TS-HHHHH CS Homeobox 11 qleeLeelFe.....knrypsaeereeLAkkl..gLterqVk 45 eeL ++F+ +n ++sa+++e++A++l +Lt++ ++ Gorai.003G023300.2 98 TKEELTKAFQiidqdNNGKISAQDIERIANELgvNLTKKEIQ 139 6799****9998789*************9999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47473	3.85E-49	17	164	IPR011992	EF-hand domain pair
Gene3D	G3DSA:1.10.238.10	1.9E-32	23	110	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	16.857	24	59	IPR002048	EF-hand domain
Pfam	PF13499	3.2E-17	27	89	IPR002048	EF-hand domain
SMART	SM00054	3.4E-8	28	56	IPR002048	EF-hand domain
CDD	cd00051	7.29E-21	28	90	No hit	No description
PROSITE pattern	PS00018	0	37	49	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	15.294	60	95	IPR002048	EF-hand domain
SMART	SM00054	1.3E-7	64	92	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	73	85	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	13.481	97	132	IPR002048	EF-hand domain
Pfam	PF13499	1.1E-15	100	163	IPR002048	EF-hand domain
SMART	SM00054	0.0038	101	129	IPR002048	EF-hand domain
CDD	cd00051	6.98E-17	101	163	No hit	No description
PROSITE pattern	PS00018	0	110	122	IPR018247	EF-Hand 1, calcium-binding site
Gene3D	G3DSA:1.10.238.10	1.1E-22	111	165	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	14.095	133	168	IPR002048	EF-hand domain
SMART	SM00054	3.9E-7	137	165	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	146	158	IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005509	Molecular Function	calcium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSSIYKDTPG KDKHKGRHHG LSQQKKQEIK EAFELFDTDG SGTIDAKELN VAMRALGFEM 60 TEEQIEQMIA DVDKDGSGAI DFDEFVYMMT AKIGERDTKE ELTKAFQIID QDNNGKISAQ 120 DIERIANELG VNLTKKEIQD MIEEADKDND GEVSMDEFMR MMKRTTYGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3qrx_A	5e-66	11	167	13	168	Centrin
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a fundamental role in microtubule-organizing center structure and function.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469537.1	1e-120	PREDICTED: caltractin-like
Swissprot	P41210	2e-95	CATR_ATRNU; Caltractin
TrEMBL	A0A0D2QEM8	1e-118	A0A0D2QEM8_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5SCV6	1e-118	A0A2P5SCV6_GOSBA; Uncharacterized protein
STRING	Gorai.003G023300.1	1e-118	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.003G023300.2
Entrez Gene	105787607

Publications ? help Back to Top
Zhu JK,Bressan RA,Hasegawa PM An Atriplex nummularia cDNA with Sequence Relatedness to the Algal Caltractin Gene. Plant Physiol., 1992. 99(4): p. 1734-5 [PMID:16669106] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]