PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G030800.1
Common NameB456_003G030800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 296aa    MW: 31970.1 Da    PI: 10.5184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G030800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-11959146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
  Gorai.003G030800.1  9 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 59
                        79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.962165IPR017930Myb domain
SuperFamilySSF466898.97E-16674IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-14860IPR009057Homeodomain-like
SMARTSM007177.0E-8863IPR001005SANT/Myb domain
PfamPF002495.3E-8959IPR001005SANT/Myb domain
CDDcd116601.42E-181061No hitNo description
SMARTSM005264.6E-13118185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.159119190IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-15120196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-13124192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.1E-8127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNLLMGAPKQ KWTAEEEAAL KAGVLKHGTG KWRNILSDPE FSSVLRSRSN VDLKDKWRNI  60
NATAIWGSRQ KAKLALKRNQ LAAKHDDNPM ALITVPPTEE VVDPKPLAIS SGTPRVTGPK  120
KPVSRLENIL LEAITSLREP GGSDRASIAL YIEEKYAAPL NLKKLLATKL KLLVANGTLT  180
KVKHKYRIAP HSTISETRSP LLALEGRQKD SSKSEKKAIN ILTKTQVDVE LSKMKTMTAE  240
EAAAAAARAV AEAEFAIAEA EKAAREADAA EAEAEAAKIF AKAAAKALKS RMLVT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469639.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X2
RefseqXP_016706224.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X2
RefseqXP_017624388.10.0PREDICTED: telomere repeat-binding factor 2-like isoform X2
SwissprotQ9FJW53e-82TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0D2NVP00.0A0A0D2NVP0_GOSRA; Uncharacterized protein
STRINGGorai.003G030800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.27e-72MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]