PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G030800.3
Common NameB456_003G030800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 214aa    MW: 23553.1 Da    PI: 10.32
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G030800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G+g W+ I +          R+  ++k++w++
  Gorai.003G030800.3  5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55
                        79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.54161IPR017930Myb domain
SuperFamilySSF466894.71E-16271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-14457IPR009057Homeodomain-like
SMARTSM007177.0E-8459IPR001005SANT/Myb domain
PfamPF002493.1E-8555IPR001005SANT/Myb domain
CDDcd116602.81E-19657No hitNo description
SMARTSM005261.3E-8114181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150417.311115206IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.29E-11116177IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-11120178IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-7123177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA  60
IWGSRQKAKL ALKRNQLAAK HDDNPMALIT VPPTEEVVDP KPLAISSGTP RVTGPKKPVS  120
RLENILLEAI TSLREPGGSD RASIALYIEE KYAAPLNLKK LLATKLKLLV ANGTLTKDCT  180
TFNYFRNKIS SACFGRKAEG FFEIGEESHQ HSY*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469639.11e-126PREDICTED: telomere repeat-binding factor 2-like isoform X2
RefseqXP_016706224.11e-126PREDICTED: telomere repeat-binding factor 2-like isoform X2
RefseqXP_017624388.11e-126PREDICTED: telomere repeat-binding factor 2-like isoform X2
SwissprotQ9FJW51e-64TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A0D2QF121e-155A0A0D2QF12_GOSRA; Uncharacterized protein
STRINGGorai.003G030800.11e-125(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.21e-59MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]