PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G038200.2
Common NameB456_003G038200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 25381 Da    PI: 10.3958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G038200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.5e-21151201256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Gorai.003G038200.2 151 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 201
                         59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.77E-35150210No hitNo description
SuperFamilySSF541716.41E-24151209IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-33151209IPR001471AP2/ERF domain
PROSITE profilePS5103223.235151208IPR001471AP2/ERF domain
SMARTSM003803.4E-38151214IPR001471AP2/ERF domain
PfamPF008478.7E-15152201IPR001471AP2/ERF domain
PRINTSPR003671.6E-11152163IPR001471AP2/ERF domain
PRINTSPR003671.6E-11174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAAVIDMYNS SRNSVFYDPL REELMKALEP FMKSASSSSS PLQPNLYPEY CSPLNSSTHL  60
FSNHGFSNYN KNMLGFEQTG SSLGLNQLTP SQILQIQSQI LHQQQQQQVA SMAAVATPPP  120
TTFENPRVGF LSPKPVPMKH VSSTPPKAAK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT  180
FDTAEEAALA YDKAAYKLRG EFARLNFPHL NSRLSVKAYK HKAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21150208160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21149208363ATERF1
3gcc_A2e-21149208363ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.31210.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271050.0HQ527105.1 Gossypium herbaceum clone NBRI_D2_459 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469770.11e-155PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656651e-56ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A0D2NVX01e-166A0A0D2NVX0_GOSRA; Uncharacterized protein
STRINGGorai.003G038200.11e-155(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-40ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]