PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G039400.1

Common Name

B456_003G039400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 116aa MW: 12822 Da PI: 9.6564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G039400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00052	74	100	10	32
HHHHHHHHHHHHHHHCTSCCC...... CS HLH 10 rrRRdriNsafeeLrellPkas....k 32 r RR+ +++e L++++ k++ k Gorai.003G039400.1 74 RLRRASTSDCLESLKSIVVKPPlslsK 100 88*****************97545551 PP

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MFISLFSSSF LFYFGCRGQW GCYRIPSTVK SSCSMPVQKL LSHVIGIIRV LFSRKEESVL 60 ERSLAYLLLN GKGRLRRAST SDCLESLKSI VVKPPLSLSK LQDQEAAEEA EKSAA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D2MJ18	1e-76	A0A0D2MJ18_GOSRA; Uncharacterized protein
STRING	Gorai.003G039400.1	2e-77	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.003G039400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]